1 sCache_like#1
46-136 aa · 91 aa · 16.1% of protein
Raw token
sCache_like:46:0.00000000658:136:91:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS16725
Histidine kinase, Classic
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassHKTypeClassicLength564 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS16725Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPAS_8HisKAHATPase_c
Protein length564 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage344 / 564 aa (61.0%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa564 aa
Domain-by-domain annotation5 items
2 HAMP#2
160-201 aa · 42 aa · 7.4% of protein
Raw token
HAMP:160:0.0000295:201:52:693 PAS_8#3
229-262 aa · 34 aa · 6.0% of protein
Raw token
PAS_8:229:0.0000347:262:34:654 HisKA#4
338-404 aa · 67 aa · 11.9% of protein
Raw token
HisKA:338:5.52e-17:404:67:645 HATPase_c#5
447-556 aa · 110 aa · 19.5% of protein
Raw token
HATPase_c:447:2.93e-28:556:110:109- Raw architecture: sCache_like:46:0.00000000658:136:91:114#HAMP:160:0.0000295:201:52:69#PAS_8:229:0.0000347:262:34:65#HisKA:338:5.52e-17:404:67:64#HATPase_c:447:2.93e-28:556:110:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159675.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span310307-312672Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01895RefSeq proteinWP_016316575.1
Context group ID
GCF_000403395::NZ_KE159675.1::G00029Context members
C814_RS16725C814_RS16730
Partner locus tags
C814_RS16725C814_RS16730
Partner old locus tags
C814_01895C814_01896
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016316575.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS16725Primary locus identifier stored in the genes table.
Old locus tagC814_01895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159675.1Sequence record reported by the local genomic context database.
Genomic interval310 307-312 001 nt1 695 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span310 307-312 672 ntGCF_000403395::NZ_KE159675.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159675.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159675.1All displayed genes belong to this local TCS context.
Neighborhood span310 307-312 672 nt2 366 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
310 307 nt312 672 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS16725GCF_000403395#C814_RS16725
HKClassicCurrent focus
310 307-312 001 nt · Reverse (-)
C814_RS16730GCF_000403395#C814_RS16730
RROmpR
311 998-312 672 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS16725The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1239908
Simplified PFAM architecture for HKOC_1239908
PFAM domain coverage: 174 / 564 aa (30.9%)
1 aa564 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[338-404] | HATPase_c[450-556]
- Domain count: 2
- Matched identifier: HKOC_1239908
- Positioned domains: HisKA 338-404 ; HATPase_c 450-556
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS16725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key