1 HAMP#1
172-241 aa · 70 aa · 15.0% of protein
Raw token
HAMP:172:0.00000000000676:241:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS16475
Histidine kinase, Classic
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS16475Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 468 aa (53.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-313 aa · 69 aa · 14.7% of protein
Raw token
HisKA:245:1.65e-17:313:69:643 HATPase_c#3
359-467 aa · 109 aa · 23.3% of protein
Raw token
HATPase_c:359:8.7e-31:467:110:109- Raw architecture: HAMP:172:0.00000000000676:241:70:69#HisKA:245:1.65e-17:313:69:64#HATPase_c:359:8.7e-31:467:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159675.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247254-249536Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01844RefSeq proteinWP_016316525.1
Context group ID
GCF_000403395::NZ_KE159675.1::G00027Context members
C814_RS16475C814_RS16480
Partner locus tags
C814_RS16475C814_RS16480
Partner old locus tags
C814_01844C814_01845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016316525.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS16475Primary locus identifier stored in the genes table.
Old locus tagC814_01844Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159675.1Sequence record reported by the local genomic context database.
Genomic interval247 254-248 660 nt1 407 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span247 254-249 536 ntGCF_000403395::NZ_KE159675.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159675.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159675.1All displayed genes belong to this local TCS context.
Neighborhood span247 254-249 536 nt2 283 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 254 nt249 536 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS16475GCF_000403395#C814_RS16475
HKClassicCurrent focus
247 254-248 660 nt · Reverse (-)
C814_RS16480GCF_000403395#C814_RS16480
RROmpR
248 835-249 536 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS16475The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1738017
Simplified PFAM architecture for HKOC_1738017
PFAM domain coverage: 228 / 468 aa (48.7%)
1 aa468 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[190-240] | HisKA[245-313] | HATPase_c[359-466]
- Domain count: 3
- Matched identifier: HKOC_1738017
- Positioned domains: HAMP 190-240 ; HisKA 245-313 ; HATPase_c 359-466
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS16475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key