1 Response_reg#1
6-115 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:6:8.27e-40:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS16435
Response regulator OmpR family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS16435Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-226 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:151:2.64e-33:226:77:77- Raw architecture: Response_reg:6:8.27e-40:115:111:111#Trans_reg_C:151:2.64e-33:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159675.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span237418-239665Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01834RefSeq proteinWP_016316515.1
Context group ID
GCF_000403395::NZ_KE159675.1::G00026Context members
C814_RS16435C814_RS16440
Partner locus tags
C814_RS16435C814_RS16440
Partner old locus tags
C814_01834C814_01835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016316515.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS16435Primary locus identifier stored in the genes table.
Old locus tagC814_01834Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159675.1Sequence record reported by the local genomic context database.
Genomic interval237 418-238 110 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span237 418-239 665 ntGCF_000403395::NZ_KE159675.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159675.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159675.1All displayed genes belong to this local TCS context.
Neighborhood span237 418-239 665 nt2 248 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
237 418 nt239 665 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS16435GCF_000403395#C814_RS16435
RROmpRCurrent focus
237 418-238 110 nt · Forward (+)
C814_RS16440GCF_000403395#C814_RS16440
HKClassic
238 163-239 665 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS16435The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202039
Simplified PFAM architecture for RROC_1202039
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[152-226]
- Domain count: 2
- Matched identifier: RROC_1202039
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 152-226 ; Trans_reg_C 152-226
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS16435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key