1 Response_reg#1
5-108 aa · 104 aa · 47.1% of protein
Raw token
Response_reg:5:3.08e-22:108:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS14520
Response regulator OmpR family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS14520Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 221 aa (76.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-216 aa · 64 aa · 29.0% of protein
Raw token
Trans_reg_C:153:1.01e-25:216:69:77- Raw architecture: Response_reg:5:3.08e-22:108:105:111#Trans_reg_C:153:1.01e-25:216:69:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159674.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span152822-154581Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01413RefSeq proteinWP_016316104.1
Context group ID
GCF_000403395::NZ_KE159674.1::G00023Context members
C814_RS14515C814_RS14520
Partner locus tags
C814_RS14515C814_RS14520
Partner old locus tags
C814_01412C814_01413
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016316104.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS14520Primary locus identifier stored in the genes table.
Old locus tagC814_01413Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159674.1Sequence record reported by the local genomic context database.
Genomic interval153 916-154 581 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span152 822-154 581 ntGCF_000403395::NZ_KE159674.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159674.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159674.1All displayed genes belong to this local TCS context.
Neighborhood span152 822-154 581 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
152 822 nt154 581 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS14515GCF_000403395#C814_RS14515
HKClassic
152 822-153 919 nt · Reverse (-)
C814_RS14520GCF_000403395#C814_RS14520
RROmpRCurrent focus
153 916-154 581 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS14520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1679354
Simplified PFAM architecture for RROC_1679354
PFAM domain coverage: 173 / 221 aa (78.3%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-108] | Trans_reg_C[148-216]
- Domain count: 2
- Matched identifier: RROC_1679354
- Positioned domains: Response_reg 5-108 ; Response_reg 5-108 ; Trans_reg_C 148-216 ; Trans_reg_C 148-216
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS14520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key