1 HisKA#1
338-404 aa · 67 aa · 7.9% of protein
Raw token
HisKA:338:1.9e-17:404:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS14260
Histidine kinase, Hybrid
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassHKTypeHybridLength846 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS14260Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length846 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage408 / 846 aa (48.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa846 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
452-570 aa · 119 aa · 14.1% of protein
Raw token
HATPase_c:452:1.67e-29:570:119:1093 Response_reg#3
586-690 aa · 105 aa · 12.4% of protein
Raw token
Response_reg:586:1.04e-21:690:105:1114 Response_reg#4
726-842 aa · 117 aa · 13.8% of protein
Raw token
Response_reg:726:1.17e-24:842:117:111- Raw architecture: HisKA:338:1.9e-17:404:67:64#HATPase_c:452:1.67e-29:570:119:109#Response_reg:586:1.04e-21:690:105:111#Response_reg:726:1.17e-24:842:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159674.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100555-105601Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01359RefSeq proteinWP_016316050.1
Context group ID
GCF_000403395::NZ_KE159674.1::G00022Context members
C814_RS14250C814_RS14260
Partner locus tags
C814_RS14250C814_RS14260
Partner old locus tags
C814_01357C814_01359
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016316050.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS14260Primary locus identifier stored in the genes table.
Old locus tagC814_01359Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159674.1Sequence record reported by the local genomic context database.
Genomic interval103 061-105 601 nt2 541 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span100 555-105 601 ntGCF_000403395::NZ_KE159674.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159674.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159674.1All displayed genes belong to this local TCS context.
Neighborhood span100 555-105 601 nt5 047 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 555 nt105 601 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS14250GCF_000403395#C814_RS14250
RRRpfG
100 555-102 675 nt · Forward (+)
C814_RS14260GCF_000403395#C814_RS14260
HKHybridCurrent focus
103 061-105 601 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS14260The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0498246
Simplified PFAM architecture for HKOC_0498246
PFAM domain coverage: 411 / 846 aa (48.6%)
1 aa846 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[338-404] | HATPase_c[452-569] | Response_reg[586-696] | Response_reg[726-840]
- Domain count: 4
- Matched identifier: HKOC_0498246
- Positioned domains: HisKA 338-404 ; HATPase_c 452-569 ; Response_reg 586-696 ; Response_reg 726-840
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS14260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key