1 Response_reg#1
6-110 aa · 105 aa · 14.9% of protein
Raw token
Response_reg:6:4.19e-23:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS14250
Response regulator, RpfG family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeRpfGLength706 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS14250Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length706 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage359 / 706 aa (50.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa706 aa
Domain-by-domain annotation3 items
2 HD#2
194-299 aa · 106 aa · 15.0% of protein
Raw token
HD:194:0.000000000000278:299:106:1103 GGDEF#3
515-662 aa · 148 aa · 21.0% of protein
Raw token
GGDEF:515:3.41e-40:662:161:160- Raw architecture: Response_reg:6:4.19e-23:110:106:111#HD:194:0.000000000000278:299:106:110#GGDEF:515:3.41e-40:662:161:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159674.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100555-105601Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01357RefSeq proteinWP_016316048.1
Context group ID
GCF_000403395::NZ_KE159674.1::G00022Context members
C814_RS14250C814_RS14260
Partner locus tags
C814_RS14250C814_RS14260
Partner old locus tags
C814_01357C814_01359
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016316048.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS14250Primary locus identifier stored in the genes table.
Old locus tagC814_01357Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159674.1Sequence record reported by the local genomic context database.
Genomic interval100 555-102 675 nt2 121 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span100 555-105 601 ntGCF_000403395::NZ_KE159674.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159674.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159674.1All displayed genes belong to this local TCS context.
Neighborhood span100 555-105 601 nt5 047 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 555 nt105 601 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS14250GCF_000403395#C814_RS14250
RRRpfGCurrent focus
100 555-102 675 nt · Forward (+)
C814_RS14260GCF_000403395#C814_RS14260
HKHybrid
103 061-105 601 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS14250The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0028222
Simplified PFAM architecture for RROC_0028222
PFAM domain coverage: 396 / 706 aa (56.1%)
1 aa706 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[6-111] | HD_5[178-320] | GGDEF[515-661]
- Domain count: 3
- Matched identifier: RROC_0028222
- Positioned domains: Response_reg 6-111 ; Response_reg 6-111 ; HD_5 178-320 ; HD_5 178-320 ; GGDEF 515-661 ; GGDEF 515-661
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS14250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key