1 HisKA#1
229-293 aa · 65 aa · 14.3% of protein
Raw token
HisKA:229:0.0000000000000815:293:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS14065
Histidine kinase, Classic
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS14065Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 453 aa (38.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-452 aa · 110 aa · 24.3% of protein
Raw token
HATPase_c:343:6.37e-21:452:110:109- Raw architecture: HisKA:229:0.0000000000000815:293:65:64#HATPase_c:343:6.37e-21:452:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159674.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59753-61806Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01317RefSeq proteinWP_016316009.1
Context group ID
GCF_000403395::NZ_KE159674.1::G00020Context members
C814_RS14060C814_RS14065
Partner locus tags
C814_RS14060C814_RS14065
Partner old locus tags
C814_01316C814_01317
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016316009.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS14065Primary locus identifier stored in the genes table.
Old locus tagC814_01317Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159674.1Sequence record reported by the local genomic context database.
Genomic interval60 445-61 806 nt1 362 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 753-61 806 ntGCF_000403395::NZ_KE159674.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159674.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159674.1All displayed genes belong to this local TCS context.
Neighborhood span59 753-61 806 nt2 054 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 753 nt61 806 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS14060GCF_000403395#C814_RS14060
RROmpR
59 753-60 448 nt · Forward (+)
C814_RS14065GCF_000403395#C814_RS14065
HKClassicCurrent focus
60 445-61 806 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS14065The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1925459
Simplified PFAM architecture for HKOC_1925459
PFAM domain coverage: 174 / 453 aa (38.4%)
1 aa453 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[230-293] | HATPase_c[343-452]
- Domain count: 2
- Matched identifier: HKOC_1925459
- Positioned domains: HisKA 230-293 ; HATPase_c 343-452
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS14065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key