1 Response_reg#1
7-117 aa · 111 aa · 30.2% of protein
Raw token
Response_reg:7:2.98e-26:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS13225
Response regulator RpfG family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeRpfGLength367 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS13225Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length367 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 367 aa (56.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa367 aa
Domain-by-domain annotation2 items
2 HD#2
210-307 aa · 98 aa · 26.7% of protein
Raw token
HD:210:0.00000000000435:307:98:110- Raw architecture: Response_reg:7:2.98e-26:117:113:111#HD:210:0.00000000000435:307:98:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159668.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span304749-309881Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01141RefSeq proteinWP_016315834.1
Context group ID
GCF_000403395::NZ_KE159668.1::G00016Context members
C814_RS13225C814_RS22300
Partner locus tags
C814_RS13225C814_RS22300
Partner old locus tags
C814_01141C814_01143
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016315834.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS13225Primary locus identifier stored in the genes table.
Old locus tagC814_01141Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159668.1Sequence record reported by the local genomic context database.
Genomic interval304 749-305 852 nt1 104 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span304 749-309 881 ntGCF_000403395::NZ_KE159668.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159668.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159668.1All displayed genes belong to this local TCS context.
Neighborhood span304 749-309 881 nt5 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
304 749 nt309 881 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS13225GCF_000403395#C814_RS13225
RRRpfGCurrent focus
304 749-305 852 nt · Reverse (-)
C814_RS22300GCF_000403395#C814_RS22300
HKHybrid
306 294-309 881 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS13225The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0446389
Simplified PFAM architecture for RROC_0446389
PFAM domain coverage: 232 / 367 aa (63.2%)
1 aa367 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-119] | HD_5[208-326]
- Domain count: 2
- Matched identifier: RROC_0446389
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; HD_5 208-326 ; HD_5 208-326
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS13225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key