1 HAMP#1
132-205 aa · 74 aa · 13.5% of protein
Raw token
HAMP:132:0.00000000318:205:76:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS12275
Histidine kinase, Classic
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassHKTypeClassicLength547 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS12275Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length547 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 547 aa (43.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa547 aa
Domain-by-domain annotation3 items
2 HisKA#2
336-398 aa · 63 aa · 11.5% of protein
Raw token
HisKA:336:0.000000000000184:398:63:643 HATPase_c#3
440-541 aa · 102 aa · 18.6% of protein
Raw token
HATPase_c:440:1.34e-20:541:106:109- Raw architecture: HAMP:132:0.00000000318:205:76:69#HisKA:336:0.000000000000184:398:63:64#HATPase_c:440:1.34e-20:541:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159668.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87048-90034Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_00934RefSeq proteinWP_022788370.1
Context group ID
GCF_000403395::NZ_KE159668.1::G00014Context members
C814_RS12270C814_RS12275
Partner locus tags
C814_RS12270C814_RS12275
Partner old locus tags
C814_00933C814_00934
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022788370.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS12275Primary locus identifier stored in the genes table.
Old locus tagC814_00934Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159668.1Sequence record reported by the local genomic context database.
Genomic interval88 391-90 034 nt1 644 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 048-90 034 ntGCF_000403395::NZ_KE159668.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159668.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159668.1All displayed genes belong to this local TCS context.
Neighborhood span87 048-90 034 nt2 987 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 048 nt90 034 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS12270GCF_000403395#C814_RS12270
RRNtrC
87 048-88 394 nt · Reverse (-)
C814_RS12275GCF_000403395#C814_RS12275
HKClassicCurrent focus
88 391-90 034 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS12275The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1301501
Simplified PFAM architecture for HKOC_1301501
PFAM domain coverage: 219 / 547 aa (40.0%)
1 aa547 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[149-204] | HisKA[336-397] | HATPase_c[441-541]
- Domain count: 3
- Matched identifier: HKOC_1301501
- Positioned domains: HAMP 149-204 ; HisKA 336-397 ; HATPase_c 441-541
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS12275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key