1 Response_reg#1
5-110 aa · 106 aa · 23.7% of protein
Raw token
Response_reg:5:9.4e-28:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS12270
Response regulator NtrC family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeNtrCLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS12270Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage265 / 448 aa (59.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation3 items
2 AAA_5#2
162-281 aa · 120 aa · 26.8% of protein
Raw token
AAA_5:162:0.00000708:281:133:1353 HTH_8#3
410-448 aa · 39 aa · 8.7% of protein
Raw token
HTH_8:410:0.000000000648:448:39:40- Raw architecture: Response_reg:5:9.4e-28:110:106:111#AAA_5:162:0.00000708:281:133:135#HTH_8:410:0.000000000648:448:39:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159668.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87048-90034Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_00933RefSeq proteinWP_016315628.1
Context group ID
GCF_000403395::NZ_KE159668.1::G00014Context members
C814_RS12270C814_RS12275
Partner locus tags
C814_RS12270C814_RS12275
Partner old locus tags
C814_00933C814_00934
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016315628.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS12270Primary locus identifier stored in the genes table.
Old locus tagC814_00933Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159668.1Sequence record reported by the local genomic context database.
Genomic interval87 048-88 394 nt1 347 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 048-90 034 ntGCF_000403395::NZ_KE159668.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159668.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159668.1All displayed genes belong to this local TCS context.
Neighborhood span87 048-90 034 nt2 987 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 048 nt90 034 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS12270GCF_000403395#C814_RS12270
RRNtrCCurrent focus
87 048-88 394 nt · Reverse (-)
C814_RS12275GCF_000403395#C814_RS12275
HKClassic
88 391-90 034 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS12270The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0296486
Simplified PFAM architecture for RROC_0296486
PFAM domain coverage: 383 / 448 aa (85.5%)
1 aa448 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[5-111] | Sigma54_activat[138-305] | AAA_lid_14[311-380] | HTH_8[410-447]
- Domain count: 4
- Matched identifier: RROC_0296486
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Sigma54_activat 138-305 ; Sigma54_activat 138-305 ; AAA_lid_14 311-380 ; AAA_lid_14 311-380 ; HTH_8 410-447 ; HTH_8 410-447
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS12270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key