1 Response_reg#1
10-107 aa · 98 aa · 28.2% of protein
Raw token
Response_reg:10:2.14e-21:107:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS11055
Response regulator, CheB family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeCheBLength347 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000403395#C814_RS11055Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage277 / 347 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
162-340 aa · 179 aa · 51.6% of protein
Raw token
CheB_methylest:162:1.26e-79:340:180:177- Raw architecture: Response_reg:10:2.14e-21:107:101:111#CheB_methylest:162:1.26e-79:340:180:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000403395::NZ_KE159660.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span92322-93365Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_03323RefSeq proteinWP_031219563.1
Context group ID
GCF_000403395::NZ_KE159660.1::G00011Context members
C814_RS11055
Partner locus tags
C814_RS11055
Partner old locus tags
C814_03323
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_031219563.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS11055Primary locus identifier stored in the genes table.
Old locus tagC814_03323Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159660.1Sequence record reported by the local genomic context database.
Genomic interval92 322-93 365 nt1 044 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span92 322-93 365 ntGCF_000403395::NZ_KE159660.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159660.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159660.1All displayed genes belong to this local TCS context.
Neighborhood span92 322-93 365 nt1 044 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 322 nt93 365 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C814_RS11055GCF_000403395#C814_RS11055
RRCheBCurrent focus
92 322-93 365 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS11055The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0488304
Simplified PFAM architecture for RROC_0488304
PFAM domain coverage: 278 / 347 aa (80.1%)
1 aa347 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[10-108] | CheB_methylest[162-340]
- Domain count: 2
- Matched identifier: RROC_0488304
- Positioned domains: Response_reg 10-108 ; Response_reg 10-108 ; CheB_methylest 162-340 ; CheB_methylest 162-340
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS11055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key