1 Response_reg#1
7-119 aa · 113 aa · 43.6% of protein
Raw token
Response_reg:7:0.000000000000277:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS09125
Response regulator Spo0A family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeSpo0ALength259 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000403395#C814_RS09125Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length259 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage217 / 259 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa259 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
148-251 aa · 104 aa · 40.2% of protein
Raw token
Spo0A_C:148:4.57e-66:251:104:104- Raw architecture: Response_reg:7:0.000000000000277:119:113:111#Spo0A_C:148:4.57e-66:251:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000403395::NZ_KE159657.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span712657-713436Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_00675RefSeq proteinWP_016315382.1
Context group ID
GCF_000403395::NZ_KE159657.1::G00008Context members
C814_RS09125
Partner locus tags
C814_RS09125
Partner old locus tags
C814_00675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016315382.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS09125Primary locus identifier stored in the genes table.
Old locus tagC814_00675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159657.1Sequence record reported by the local genomic context database.
Genomic interval712 657-713 436 nt780 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span712 657-713 436 ntGCF_000403395::NZ_KE159657.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159657.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159657.1All displayed genes belong to this local TCS context.
Neighborhood span712 657-713 436 nt780 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
712 657 nt713 436 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C814_RS09125GCF_000403395#C814_RS09125
RRSpo0ACurrent focus
712 657-713 436 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS09125The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0657489
Simplified PFAM architecture for RROC_0657489
PFAM domain coverage: 217 / 259 aa (83.8%)
1 aa259 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-119] | Spo0A_C[148-251]
- Domain count: 2
- Matched identifier: RROC_0657489
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; Spo0A_C 148-251 ; Spo0A_C 148-251
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS09125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key