1 Hemerythrin#1
15-128 aa · 114 aa · 25.1% of protein
Raw token
Hemerythrin:15:0.00000000975:128:121:127P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS08450
Response regulator, unclassified
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeunclassifiedLength454 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000403395#C814_RS08450Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
HemerythrinResponse_reg
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage226 / 454 aa (49.8%)Merged over positioned domains only.
Domain description1 Hemerythrin,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 Response_reg#2
335-446 aa · 112 aa · 24.7% of protein
Raw token
Response_reg:335:2.94e-25:446:113:111- Raw architecture: Hemerythrin:15:0.00000000975:128:121:127#Response_reg:335:2.94e-25:446:113:111
- Domain description: 1 Hemerythrin,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000403395::NZ_KE159657.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span558538-559902Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_00534RefSeq proteinWP_016315243.1
Context group ID
GCF_000403395::NZ_KE159657.1::G00007Context members
C814_RS08450
Partner locus tags
C814_RS08450
Partner old locus tags
C814_00534
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016315243.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS08450Primary locus identifier stored in the genes table.
Old locus tagC814_00534Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159657.1Sequence record reported by the local genomic context database.
Genomic interval558 538-559 902 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span558 538-559 902 ntGCF_000403395::NZ_KE159657.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159657.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159657.1All displayed genes belong to this local TCS context.
Neighborhood span558 538-559 902 nt1 365 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
558 538 nt559 902 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C814_RS08450GCF_000403395#C814_RS08450
RRunclassifiedCurrent focus
558 538-559 902 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS08450The current gene is the representative for this cluster.
PFAM architectureHemerythrin + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0268594
Simplified PFAM architecture for RROC_0268594
PFAM domain coverage: 224 / 454 aa (49.3%)
1 aa454 aa
HemerythrinResponse_reg
- Simplified architecture: Hemerythrin + Response_reg
- Raw architecture: Hemerythrin[16-128] | Response_reg[335-445]
- Domain count: 2
- Matched identifier: RROC_0268594
- Positioned domains: Hemerythrin 16-128 ; Hemerythrin 16-128 ; Response_reg 335-445 ; Response_reg 335-445
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS08450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key