1 HisKA#1
325-391 aa · 67 aa · 9.4% of protein
Raw token
HisKA:325:3.98e-17:391:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS03735
Histidine kinase, Hybrid
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeHybridLength714 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210015#CK5_RS03735Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length714 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 714 aa (42.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa714 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
438-556 aa · 119 aa · 16.7% of protein
Raw token
HATPase_c:438:5.67e-29:556:119:1093 Response_reg#3
584-700 aa · 117 aa · 16.4% of protein
Raw token
Response_reg:584:2.3e-26:700:117:111- Raw architecture: HisKA:325:3.98e-17:391:67:64#HATPase_c:438:5.67e-29:556:119:109#Response_reg:584:2.3e-26:700:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210015::NC_021022.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span773344-775488Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_07740RefSeq proteinWP_015541200.1
Context group ID
GCF_000210015::NC_021022.1::G00016Context members
CK5_RS03735
Partner locus tags
CK5_RS03735
Partner old locus tags
CK5_07740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015541200.1Primary protein accession used for annex mappings.
UniProt accessionD4LXG0Primary UniProt accession resolved in the annex database.
UniProt IDD4LXG0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS03735Primary locus identifier stored in the genes table.
Old locus tagCK5_07740Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval773 344-775 488 nt2 145 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span773 344-775 488 ntGCF_000210015::NC_021022.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span773 344-775 488 nt2 145 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
773 344 nt775 488 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CK5_RS03735GCF_000210015#CK5_RS03735
HKHybridCurrent focus
773 344-775 488 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS03735The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0743823
Simplified PFAM architecture for HKOC_0743823
PFAM domain coverage: 301 / 714 aa (42.2%)
1 aa714 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[325-391] | HATPase_c[438-555] | Response_reg[584-699]
- Domain count: 3
- Matched identifier: HKOC_0743823
- Positioned domains: HisKA 325-391 ; HATPase_c 438-555 ; Response_reg 584-699
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS03735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key