1 HisKA#1
638-704 aa · 67 aa · 7.8% of protein
Raw token
HisKA:638:0.00000000000000199:704:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS00505
Histidine kinase, Classic
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeClassicLength858 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS00505Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length858 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 858 aa (18.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa858 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
750-842 aa · 93 aa · 10.8% of protein
Raw token
HATPase_c:750:0.0000000000258:842:97:109- Raw architecture: HisKA:638:0.00000000000000199:704:67:64#HATPase_c:750:0.0000000000258:842:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span110515-113871Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_01140RefSeq proteinWP_015540686.1
Context group ID
GCF_000210015::NC_021022.1::G00002Context members
CK5_RS00500CK5_RS00505
Partner locus tags
CK5_RS00500CK5_RS00505
Partner old locus tags
CK5_01130CK5_01140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015540686.1Primary protein accession used for annex mappings.
UniProt accessionA0A414JA60Primary UniProt accession resolved in the annex database.
UniProt IDA0A414JA60_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS00505Primary locus identifier stored in the genes table.
Old locus tagCK5_01140Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval111 295-113 871 nt2 577 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span110 515-113 871 ntGCF_000210015::NC_021022.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span110 515-113 871 nt3 357 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 515 nt113 871 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS00500GCF_000210015#CK5_RS00500
RROmpR
110 515-111 207 nt · Forward (+)
CK5_RS00505GCF_000210015#CK5_RS00505
HKClassicCurrent focus
111 295-113 871 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS00505The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0474384
Simplified PFAM architecture for HKOC_0474384
PFAM domain coverage: 158 / 858 aa (18.4%)
1 aa858 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[638-703] | HATPase_c[751-842]
- Domain count: 2
- Matched identifier: HKOC_0474384
- Positioned domains: HisKA 638-703 ; HATPase_c 751-842
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS00505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key