1 Response_reg#1
4-116 aa · 113 aa · 27.9% of protein
Raw token
Response_reg:4:4.33e-39:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS00260
Response regulator, unclassified
Blautia obeum A2-162 · GCF_000210015
ClassRRTypeunclassifiedLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS00260Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 405 aa (46.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
309-345 aa · 37 aa · 9.1% of protein
Raw token
HTH_AraC:309:0.00000308:345:37:423 HTH_AraC#3
357-395 aa · 39 aa · 9.6% of protein
Raw token
HTH_AraC:357:0.00000000697:395:39:42- Raw architecture: Response_reg:4:4.33e-39:116:113:111#HTH_AraC:309:0.00000308:345:37:42#HTH_AraC:357:0.00000000697:395:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58092-61099Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_00640RefSeq proteinWP_015540642.1
Context group ID
GCF_000210015::NC_021022.1::G00001Context members
CK5_RS00255CK5_RS00260
Partner locus tags
CK5_RS00255CK5_RS00260
Partner old locus tags
CK5_00630CK5_00640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015540642.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J9S4Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J9S4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS00260Primary locus identifier stored in the genes table.
Old locus tagCK5_00640Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval59 882-61 099 nt1 218 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 092-61 099 ntGCF_000210015::NC_021022.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span58 092-61 099 nt3 008 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 092 nt61 099 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS00255GCF_000210015#CK5_RS00255
HKClassic
58 092-59 897 nt · Forward (+)
CK5_RS00260GCF_000210015#CK5_RS00260
RRunclassifiedCurrent focus
59 882-61 099 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS00260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0377551
Simplified PFAM architecture for RROC_0377551
PFAM domain coverage: 190 / 405 aa (46.9%)
1 aa405 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[319-395]
- Domain count: 2
- Matched identifier: RROC_0377551
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 319-395 ; HTH_18 319-395
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS00260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key