1 HAMP#1
173-240 aa · 68 aa · 14.5% of protein
Raw token
HAMP:173:0.000000000000227:240:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK5_RS01570
Histidine kinase, Classic
Blautia obeum A2-162 · GCF_000210015
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210015#CK5_RS01570Stable P2CS identifier used across views.
GenomeGCF_000210015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 468 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-308 aa · 64 aa · 13.7% of protein
Raw token
HisKA:245:0.00000000000000385:308:64:643 HATPase_c#3
356-464 aa · 109 aa · 23.3% of protein
Raw token
HATPase_c:356:3.87e-30:464:109:109- Raw architecture: HAMP:173:0.000000000000227:240:68:69#HisKA:245:0.00000000000000385:308:64:64#HATPase_c:356:3.87e-30:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210015::NC_021022.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span336528-338632Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK5_03250RefSeq proteinWP_015540873.1
Context group ID
GCF_000210015::NC_021022.1::G00005Context members
CK5_RS01570CK5_RS01575
Partner locus tags
CK5_RS01570CK5_RS01575
Partner old locus tags
CK5_03250CK5_03260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015540873.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7I4T8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7I4T8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK5_RS01570Primary locus identifier stored in the genes table.
Old locus tagCK5_03250Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021022.1Sequence record reported by the local genomic context database.
Genomic interval336 528-337 934 nt1 407 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span336 528-338 632 ntGCF_000210015::NC_021022.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210015::NC_021022.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021022.1All displayed genes belong to this local TCS context.
Neighborhood span336 528-338 632 nt2 105 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
336 528 nt338 632 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK5_RS01570GCF_000210015#CK5_RS01570
HKClassicCurrent focus
336 528-337 934 nt · Reverse (-)
CK5_RS01575GCF_000210015#CK5_RS01575
RROmpR
337 931-338 632 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS01570The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1737722
Simplified PFAM architecture for HKOC_1737722
PFAM domain coverage: 225 / 468 aa (48.1%)
1 aa468 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[188-239] | HisKA[245-307] | HATPase_c[357-466]
- Domain count: 3
- Matched identifier: HKOC_1737722
- Positioned domains: HAMP 188-239 ; HisKA 245-307 ; HATPase_c 357-466
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS01570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 314 · GCF_000210015
AssemblyASM21001v1 · Chromosomehaploid
Genome composition3 757 491 bp · 42,5% GCBlautia obeum A2-162
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key