1 Response_reg#1
5-118 aa · 114 aa · 21.3% of protein
Raw token
Response_reg:5:1.63e-20:118:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERE_RS00100
Response regulator, unclassified
Agathobacter rectalis M104/1 · GCF_000209955
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209955#ERE_RS00100Stable P2CS identifier used across views.
GenomeGCF_000209955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage195 / 535 aa (36.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-478 aa · 43 aa · 8.0% of protein
Raw token
HTH_AraC:436:0.000000158:478:43:423 HTH_AraC#3
490-527 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:490:0.000000003:527:38:42- Raw architecture: Response_reg:5:1.63e-20:118:114:111#HTH_AraC:436:0.000000158:478:43:42#HTH_AraC:490:0.000000003:527:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209955::NC_021044.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12791-15194Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERE_00320RefSeq proteinWP_307878001.1
Context group ID
GCF_000209955::NC_021044.1::G00001Context members
ERE_RS00100ERE_RS00105
Partner locus tags
ERE_RS00100ERE_RS00105
Partner old locus tags
ERE_00320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_307878001.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERE_RS00100Primary locus identifier stored in the genes table.
Old locus tagERE_00320Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021044.1Sequence record reported by the local genomic context database.
Genomic interval12 791-14 398 nt1 608 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 791-15 194 ntGCF_000209955::NC_021044.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209955::NC_021044.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021044.1All displayed genes belong to this local TCS context.
Neighborhood span12 791-15 194 nt2 404 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 791 nt15 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ERE_RS00100GCF_000209955#ERE_RS00100
RRunclassifiedCurrent focus
12 791-14 398 nt · Reverse (-)
ERE_RS00105GCF_000209955#ERE_RS00105
HKClassic
14 370-15 194 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS00100The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0100445
Simplified PFAM architecture for RROC_0100445
PFAM domain coverage: 192 / 535 aa (35.9%)
1 aa535 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[450-528]
- Domain count: 2
- Matched identifier: RROC_0100445
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HTH_18 450-528 ; HTH_18 450-528
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS00100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 317 · GCF_000209955
AssemblyASM20995v1 · Chromosomehaploid
Genome composition3 698 419 bp · 40,5% GCAgathobacter rectalis M104/1
Signal transduction countsGenes 73 · HK 30 · RR 41CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key