1 Response_reg#1
4-116 aa · 113 aa · 48.1% of protein
Raw token
Response_reg:4:0.000000000000374:116:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERE_RS00530
Response regulator LytTR family
Agathobacter rectalis M104/1 · GCF_000209955
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000209955#ERE_RS00530Stable P2CS identifier used across views.
GenomeGCF_000209955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 235 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-226 aa · 91 aa · 38.7% of protein
Raw token
LytTR:136:2.49e-17:226:96:98- Raw architecture: Response_reg:4:0.000000000000374:116:115:111#LytTR:136:2.49e-17:226:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000209955::NC_021044.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span103833-104540Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERE_01220RefSeq proteinWP_015567858.1
Context group ID
GCF_000209955::NC_021044.1::G00003Context members
ERE_RS00530
Partner locus tags
ERE_RS00530
Partner old locus tags
ERE_01220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015567858.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7MXA7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7MXA7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERE_RS00530Primary locus identifier stored in the genes table.
Old locus tagERE_01220Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021044.1Sequence record reported by the local genomic context database.
Genomic interval103 833-104 540 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 833-104 540 ntGCF_000209955::NC_021044.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209955::NC_021044.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021044.1All displayed genes belong to this local TCS context.
Neighborhood span103 833-104 540 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 833 nt104 540 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ERE_RS00530GCF_000209955#ERE_RS00530
RRLytTRCurrent focus
103 833-104 540 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015555785#I2G12_RS21365Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0871200
Simplified PFAM architecture for RROC_0871200
PFAM domain coverage: 201 / 241 aa (83.4%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-121] | LytTR[144-232]
- Domain count: 2
- Matched identifier: RROC_0871200
- Positioned domains: Response_reg 10-121 ; LytTR 144-232
Cluster members and taxonomy
Representative gene: GCF_015555785#I2G12_RS21365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 317 · GCF_000209955
AssemblyASM20995v1 · Chromosomehaploid
Genome composition3 698 419 bp · 40,5% GCAgathobacter rectalis M104/1
Signal transduction countsGenes 73 · HK 30 · RR 41CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key