1 His_kinase#1
60-139 aa · 80 aa · 29.2% of protein
Raw token
His_kinase:60:1.01e-23:139:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERE_RS00105
Histidine kinase, Classic
Agathobacter rectalis M104/1 · GCF_000209955
ClassHKTypeClassicLength274 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209955#ERE_RS00105Stable P2CS identifier used across views.
GenomeGCF_000209955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length274 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 274 aa (66.8%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa274 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
159-261 aa · 103 aa · 37.6% of protein
Raw token
HATPase_c:159:0.00000000000322:261:104:109- Raw architecture: His_kinase:60:1.01e-23:139:80:80#HATPase_c:159:0.00000000000322:261:104:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209955::NC_021044.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12791-15194Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000209955::NC_021044.1::G00001Context members
ERE_RS00100ERE_RS00105
Partner locus tags
ERE_RS00100ERE_RS00105
Partner old locus tags
ERE_00320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_307878002.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERE_RS00105Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021044.1Sequence record reported by the local genomic context database.
Genomic interval14 370-15 194 nt825 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 791-15 194 ntGCF_000209955::NC_021044.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209955::NC_021044.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021044.1All displayed genes belong to this local TCS context.
Neighborhood span12 791-15 194 nt2 404 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 791 nt15 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ERE_RS00100GCF_000209955#ERE_RS00100
RRunclassified
12 791-14 398 nt · Reverse (-)
ERE_RS00105GCF_000209955#ERE_RS00105
HKClassicCurrent focus
14 370-15 194 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS15690Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1008556
Simplified PFAM architecture for HKOC_1008556
PFAM domain coverage: 181 / 609 aa (29.7%)
1 aa609 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[396-473] | HATPase_c[494-596]
- Domain count: 2
- Matched identifier: HKOC_1008556
- Positioned domains: His_kinase 396-473 ; HATPase_c 494-596
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS15690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 317 · GCF_000209955
AssemblyASM20995v1 · Chromosomehaploid
Genome composition3 698 419 bp · 40,5% GCAgathobacter rectalis M104/1
Signal transduction countsGenes 73 · HK 30 · RR 41CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key