1 HAMP#1
189-257 aa · 69 aa · 13.7% of protein
Raw token
HAMP:189:0.0000000000000356:257:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS14845
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength504 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS14845Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length504 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 504 aa (49.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa504 aa
Domain-by-domain annotation3 items
2 HisKA#2
282-349 aa · 68 aa · 13.5% of protein
Raw token
HisKA:282:0.00000000000000231:349:68:643 HATPase_c#3
394-504 aa · 111 aa · 22.0% of protein
Raw token
HATPase_c:394:4.17e-20:504:112:109- Raw architecture: HAMP:189:0.0000000000000356:257:69:69#HisKA:282:0.00000000000000231:349:68:64#HATPase_c:394:4.17e-20:504:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2948862-2951053Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_33670RefSeq proteinWP_015526982.1
Context group ID
GCF_000209835::NC_021014.1::G00029Context members
CK1_RS14840CK1_RS14845
Partner locus tags
CK1_RS14840CK1_RS14845
Partner old locus tags
CK1_33660CK1_33670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015526982.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS14845Primary locus identifier stored in the genes table.
Old locus tagCK1_33670Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval2 949 539-2 951 053 nt1 515 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 948 862-2 951 053 ntGCF_000209835::NC_021014.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span2 948 862-2 951 053 nt2 192 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 948 862 nt2 951 053 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS14840GCF_000209835#CK1_RS14840
RROmpR
2 948 862-2 949 542 nt · Forward (+)
CK1_RS14845GCF_000209835#CK1_RS14845
HKClassicCurrent focus
2 949 539-2 951 053 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS14845The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1454116
Simplified PFAM architecture for HKOC_1454116
PFAM domain coverage: 228 / 504 aa (45.2%)
1 aa504 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[206-256] | HisKA[282-349] | HATPase_c[395-503]
- Domain count: 3
- Matched identifier: HKOC_1454116
- Positioned domains: HAMP 206-256 ; HisKA 282-349 ; HATPase_c 395-503
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS14845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key