1 Response_reg#1
3-107 aa · 105 aa · 47.5% of protein
Raw token
Response_reg:3:0.00000000000898:107:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS00770
Response regulator LytTR family
Ruminococcus sp. SR1/5 · GCF_000209835
ClassRRTypeLytTRLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000209835#CK1_RS00770Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 221 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-200 aa · 58 aa · 26.2% of protein
Raw token
LytTR:143:0.000000000000153:200:59:98- Raw architecture: Response_reg:3:0.00000000000898:107:107:111#LytTR:143:0.000000000000153:200:59:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000209835::NC_021014.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span152120-152785Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_01750RefSeq proteinWP_015524441.1
Context group ID
GCF_000209835::NC_021014.1::G00005Context members
CK1_RS00770
Partner locus tags
CK1_RS00770
Partner old locus tags
CK1_01750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015524441.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS00770Primary locus identifier stored in the genes table.
Old locus tagCK1_01750Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval152 120-152 785 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span152 120-152 785 ntGCF_000209835::NC_021014.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span152 120-152 785 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
152 120 nt152 785 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CK1_RS00770GCF_000209835#CK1_RS00770
RRLytTRCurrent focus
152 120-152 785 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS00770The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1678183
Simplified PFAM architecture for RROC_1678183
PFAM domain coverage: 178 / 221 aa (80.5%)
1 aa221 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-117] | LytTR[139-201]
- Domain count: 2
- Matched identifier: RROC_1678183
- Positioned domains: Response_reg 3-117 ; Response_reg 3-117 ; LytTR 139-201 ; LytTR 139-201
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS00770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key