1 HAMP#1
174-241 aa · 68 aa · 14.5% of protein
Raw token
HAMP:174:0.00000000000304:241:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS00330
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength469 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS00330Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length469 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 469 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa469 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-309 aa · 64 aa · 13.6% of protein
Raw token
HisKA:246:0.00000000000000166:309:64:643 HATPase_c#3
357-465 aa · 109 aa · 23.2% of protein
Raw token
HATPase_c:357:1.38e-27:465:109:109- Raw architecture: HAMP:174:0.00000000000304:241:70:69#HisKA:246:0.00000000000000166:309:64:64#HATPase_c:357:1.38e-27:465:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60479-62586Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_00820RefSeq proteinWP_015524366.1
Context group ID
GCF_000209835::NC_021014.1::G00002Context members
CK1_RS00330CK1_RS00335
Partner locus tags
CK1_RS00330CK1_RS00335
Partner old locus tags
CK1_00820CK1_00830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015524366.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WB33Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WB33_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS00330Primary locus identifier stored in the genes table.
Old locus tagCK1_00820Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval60 479-61 888 nt1 410 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 479-62 586 ntGCF_000209835::NC_021014.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span60 479-62 586 nt2 108 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 479 nt62 586 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS00330GCF_000209835#CK1_RS00330
HKClassicCurrent focus
60 479-61 888 nt · Reverse (-)
CK1_RS00335GCF_000209835#CK1_RS00335
RROmpR
61 885-62 586 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS00330The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1727041
Simplified PFAM architecture for HKOC_1727041
PFAM domain coverage: 222 / 469 aa (47.3%)
1 aa469 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[193-240] | HisKA[246-309] | HATPase_c[358-467]
- Domain count: 3
- Matched identifier: HKOC_1727041
- Positioned domains: HAMP 193-240 ; HisKA 246-309 ; HATPase_c 358-467
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS00330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key