1 dCache_1#1
36-253 aa · 218 aa · 37.7% of protein
Raw token
dCache_1:36:0.0000000000092:253:218:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS00580
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength579 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS00580Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length579 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage472 / 579 aa (81.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa579 aa
Domain-by-domain annotation4 items
2 HAMP#2
284-353 aa · 70 aa · 12.1% of protein
Raw token
HAMP:284:0.00000000000000213:353:70:693 His_kinase#3
368-447 aa · 80 aa · 13.8% of protein
Raw token
His_kinase:368:1.22e-25:447:80:804 HATPase_c#4
464-567 aa · 104 aa · 18.0% of protein
Raw token
HATPase_c:464:0.0000000000000112:567:109:109- Raw architecture: dCache_1:36:0.0000000000092:253:218:195#HAMP:284:0.00000000000000213:353:70:69#His_kinase:368:1.22e-25:447:80:80#HATPase_c:464:0.0000000000000112:567:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114563-117429Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_01370RefSeq proteinWP_015524411.1
Context group ID
GCF_000209835::NC_021014.1::G00004Context members
CK1_RS00580CK1_RS00585
Partner locus tags
CK1_RS00580CK1_RS00585
Partner old locus tags
CK1_01370CK1_01380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015524411.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS00580Primary locus identifier stored in the genes table.
Old locus tagCK1_01370Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval114 563-116 302 nt1 740 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 563-117 429 ntGCF_000209835::NC_021014.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span114 563-117 429 nt2 867 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 563 nt117 429 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS00580GCF_000209835#CK1_RS00580
HKClassicCurrent focus
114 563-116 302 nt · Forward (+)
CK1_RS00585GCF_000209835#CK1_RS00585
RRunclassified
116 302-117 429 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS00580The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1167168
Simplified PFAM architecture for HKOC_1167168
PFAM domain coverage: 233 / 579 aa (40.2%)
1 aa579 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[301-352] | His_kinase[368-445] | HATPase_c[466-568]
- Domain count: 3
- Matched identifier: HKOC_1167168
- Positioned domains: HAMP 301-352 ; His_kinase 368-445 ; HATPase_c 466-568
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS00580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key