1 dCache_1#1
182-294 aa · 113 aa · 18.8% of protein
Raw token
dCache_1:182:0.0000000000171:294:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CK1_RS12795
Histidine kinase, Classic
Ruminococcus sp. SR1/5 · GCF_000209835
ClassHKTypeClassicLength602 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209835#CK1_RS12795Stable P2CS identifier used across views.
GenomeGCF_000209835Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length602 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage370 / 602 aa (61.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa602 aa
Domain-by-domain annotation4 items
2 HAMP#2
311-380 aa · 70 aa · 11.6% of protein
Raw token
HAMP:311:0.00000000000217:380:70:693 His_kinase#3
396-473 aa · 78 aa · 13.0% of protein
Raw token
His_kinase:396:1.58e-34:473:79:804 HATPase_c#4
487-595 aa · 109 aa · 18.1% of protein
Raw token
HATPase_c:487:1.02e-17:595:111:109- Raw architecture: dCache_1:182:0.0000000000171:294:113:195#HAMP:311:0.00000000000217:380:70:69#His_kinase:396:1.58e-34:473:79:80#HATPase_c:487:1.02e-17:595:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209835::NC_021014.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2567888-2571292Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCK1_29150RefSeq proteinWP_015526628.1
Context group ID
GCF_000209835::NC_021014.1::G00027Context members
CK1_RS12795CK1_RS12800
Partner locus tags
CK1_RS12795CK1_RS12800
Partner old locus tags
CK1_29150CK1_29160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015526628.1Primary protein accession used for annex mappings.
UniProt accessionA0ABW9X416Primary UniProt accession resolved in the annex database.
UniProt IDA0ABW9X416_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCK1_RS12795Primary locus identifier stored in the genes table.
Old locus tagCK1_29150Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021014.1Sequence record reported by the local genomic context database.
Genomic interval2 567 888-2 569 696 nt1 809 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 567 888-2 571 292 ntGCF_000209835::NC_021014.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209835::NC_021014.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021014.1All displayed genes belong to this local TCS context.
Neighborhood span2 567 888-2 571 292 nt3 405 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 567 888 nt2 571 292 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CK1_RS12795GCF_000209835#CK1_RS12795
HKClassicCurrent focus
2 567 888-2 569 696 nt · Reverse (-)
CK1_RS12800GCF_000209835#CK1_RS12800
RRunclassified
2 569 700-2 571 292 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS12795The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1041904
Simplified PFAM architecture for HKOC_1041904
PFAM domain coverage: 472 / 602 aa (78.4%)
1 aa602 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[54-293] | HAMP[333-379] | His_kinase[396-473] | HATPase_c[490-596]
- Domain count: 4
- Matched identifier: HKOC_1041904
- Positioned domains: dCache_1 54-293 ; HAMP 333-379 ; His_kinase 396-473 ; HATPase_c 490-596
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS12795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 323 · GCF_000209835
AssemblyASM20983v1 · Chromosomehaploid
Genome composition3 545 606 bp · 44,0% GCRuminococcus sp. SR1/5
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key