1 HAMP#1
177-246 aa · 70 aa · 13.0% of protein
Raw token
HAMP:177:0.00000000000000642:246:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS10955
Histidine kinase, Classic
Faecalibacterium duncaniae · GCF_000162015
ClassHKTypeClassicLength540 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000162015#FAEPRAA2165_RS10955Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 540 aa (46.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-317 aa · 67 aa · 12.4% of protein
Raw token
HisKA:251:3.72e-19:317:67:643 HATPase_c#3
363-474 aa · 112 aa · 20.7% of protein
Raw token
HATPase_c:363:1.48e-29:474:112:109- Raw architecture: HAMP:177:0.00000000000000642:246:70:69#HisKA:251:3.72e-19:317:67:64#HATPase_c:363:1.48e-29:474:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000162015::NZ_GG697153.2::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span123072-125392Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_02637RefSeq proteinWP_005934700.1
Context group ID
GCF_000162015::NZ_GG697153.2::G00009Context members
FAEPRAA2165_RS10955FAEPRAA2165_RS10960
Partner locus tags
FAEPRAA2165_RS10955FAEPRAA2165_RS10960
Partner old locus tags
FAEPRAA2165_02637FAEPRAA2165_02638
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005934700.1Primary protein accession used for annex mappings.
UniProt accessionC7H8J5Primary UniProt accession resolved in the annex database.
UniProt IDC7H8J5_FAED2Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS10955Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_02637Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697153.2Sequence record reported by the local genomic context database.
Genomic interval123 072-124 694 nt1 623 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span123 072-125 392 ntGCF_000162015::NZ_GG697153.2::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697153.2::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697153.2All displayed genes belong to this local TCS context.
Neighborhood span123 072-125 392 nt2 321 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 072 nt125 392 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAA2165_RS10955GCF_000162015#FAEPRAA2165_RS10955
HKClassicCurrent focus
123 072-124 694 nt · Reverse (-)
FAEPRAA2165_RS10960GCF_000162015#FAEPRAA2165_RS10960
RROmpR
124 694-125 392 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS10955The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1320938
Simplified PFAM architecture for HKOC_1320938
PFAM domain coverage: 231 / 540 aa (42.8%)
1 aa540 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-246] | HisKA[251-317] | HATPase_c[364-474]
- Domain count: 3
- Matched identifier: HKOC_1320938
- Positioned domains: HAMP 194-246 ; HisKA 251-317 ; HATPase_c 364-474
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS10955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key