1 HisKA#1
293-355 aa · 63 aa · 12.3% of protein
Raw token
HisKA:293:0.0000417:355:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS06495
Histidine kinase, Classic
Faecalibacterium duncaniae · GCF_000162015
ClassHKTypeClassicLength512 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000162015#FAEPRAA2165_RS06495Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length512 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 512 aa (33.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa512 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
401-509 aa · 109 aa · 21.3% of protein
Raw token
HATPase_c:401:1.38e-34:509:109:109- Raw architecture: HisKA:293:0.0000417:355:63:64#HATPase_c:401:1.38e-34:509:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000162015::NZ_GG697151.2::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span205863-207401Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_01560RefSeq proteinWP_005932712.1
Context group ID
GCF_000162015::NZ_GG697151.2::G00017Context members
FAEPRAA2165_RS06495
Partner locus tags
FAEPRAA2165_RS06495
Partner old locus tags
FAEPRAA2165_01560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005932712.1Primary protein accession used for annex mappings.
UniProt accessionC7H5I9Primary UniProt accession resolved in the annex database.
UniProt IDC7H5I9_FAED2Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS06495Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_01560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697151.2Sequence record reported by the local genomic context database.
Genomic interval205 863-207 401 nt1 539 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span205 863-207 401 ntGCF_000162015::NZ_GG697151.2::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697151.2::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697151.2All displayed genes belong to this local TCS context.
Neighborhood span205 863-207 401 nt1 539 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
205 863 nt207 401 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FAEPRAA2165_RS06495GCF_000162015#FAEPRAA2165_RS06495
HKClassicCurrent focus
205 863-207 401 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS06495The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1419683
Simplified PFAM architecture for HKOC_1419683
PFAM domain coverage: 109 / 512 aa (21.3%)
1 aa512 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[401-509]
- Domain count: 1
- Matched identifier: HKOC_1419683
- Positioned domains: HATPase_c 401-509
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS06495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key