1 Response_reg#1
6-118 aa · 113 aa · 43.0% of protein
Raw token
Response_reg:6:6.06e-27:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS04960
Response regulator, unclassified
Faecalibacterium duncaniae · GCF_000162015
ClassRRTypeunclassifiedLength263 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000162015#FAEPRAA2165_RS04960Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 263 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
163-204 aa · 42 aa · 16.0% of protein
Raw token
HTH_AraC:163:0.000000934:204:42:423 HTH_AraC#3
219-253 aa · 35 aa · 13.3% of protein
Raw token
HTH_AraC:219:0.000000000082:253:35:42- Raw architecture: Response_reg:6:6.06e-27:118:113:111#HTH_AraC:163:0.000000934:204:42:42#HTH_AraC:219:0.000000000082:253:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000162015::NZ_GG697150.2::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span446203-448478Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_01195RefSeq proteinWP_005931723.1
Context group ID
GCF_000162015::NZ_GG697150.2::G00028Context members
FAEPRAA2165_RS04960FAEPRAA2165_RS04965
Partner locus tags
FAEPRAA2165_RS04960FAEPRAA2165_RS04965
Partner old locus tags
FAEPRAA2165_01195FAEPRAA2165_01196
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005931723.1Primary protein accession used for annex mappings.
UniProt accessionC7H4I1Primary UniProt accession resolved in the annex database.
UniProt IDC7H4I1_FAED2Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS04960Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_01195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697150.2Sequence record reported by the local genomic context database.
Genomic interval446 203-446 994 nt792 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span446 203-448 478 ntGCF_000162015::NZ_GG697150.2::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697150.2::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697150.2All displayed genes belong to this local TCS context.
Neighborhood span446 203-448 478 nt2 276 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
446 203 nt448 478 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAA2165_RS04960GCF_000162015#FAEPRAA2165_RS04960
RRunclassifiedCurrent focus
446 203-446 994 nt · Reverse (-)
FAEPRAA2165_RS04965GCF_000162015#FAEPRAA2165_RS04965
HKClassic
446 991-448 478 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS04960The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0639444
Simplified PFAM architecture for RROC_0639444
PFAM domain coverage: 189 / 263 aa (71.9%)
1 aa263 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-117] | HTH_18[177-253]
- Domain count: 2
- Matched identifier: RROC_0639444
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; HTH_18 177-253 ; HTH_18 177-253
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS04960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key