1 Response_reg#1
10-119 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:10:1.04e-23:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS04260
Response regulator OmpR family
Faecalibacterium duncaniae · GCF_000162015
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000162015#FAEPRAA2165_RS04260Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:157:1.2e-29:233:77:77- Raw architecture: Response_reg:10:1.04e-23:119:111:111#Trans_reg_C:157:1.2e-29:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000162015::NZ_GG697150.2::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span285283-287363Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_01030RefSeq proteinWP_005931244.1
Context group ID
GCF_000162015::NZ_GG697150.2::G00026Context members
FAEPRAA2165_RS04255FAEPRAA2165_RS04260
Partner locus tags
FAEPRAA2165_RS04255FAEPRAA2165_RS04260
Partner old locus tags
FAEPRAA2165_01029FAEPRAA2165_01030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005931244.1Primary protein accession used for annex mappings.
UniProt accessionC7H417Primary UniProt accession resolved in the annex database.
UniProt IDC7H417_FAED2Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS04260Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_01030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697150.2Sequence record reported by the local genomic context database.
Genomic interval286 644-287 363 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span285 283-287 363 ntGCF_000162015::NZ_GG697150.2::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697150.2::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697150.2All displayed genes belong to this local TCS context.
Neighborhood span285 283-287 363 nt2 081 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
285 283 nt287 363 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAA2165_RS04255GCF_000162015#FAEPRAA2165_RS04255
HKClassic
285 283-286 647 nt · Reverse (-)
FAEPRAA2165_RS04260GCF_000162015#FAEPRAA2165_RS04260
RROmpRCurrent focus
286 644-287 363 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS04260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905667
Simplified PFAM architecture for RROC_0905667
PFAM domain coverage: 186 / 239 aa (77.8%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-118] | Trans_reg_C[157-233]
- Domain count: 2
- Matched identifier: RROC_0905667
- Positioned domains: Response_reg 10-118 ; Response_reg 10-118 ; Trans_reg_C 157-233 ; Trans_reg_C 157-233
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS04260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key