1 HAMP#1
159-225 aa · 67 aa · 14.8% of protein
Raw token
HAMP:159:0.0000477:225:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS04255
Histidine kinase, Classic
Faecalibacterium duncaniae · GCF_000162015
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000162015#FAEPRAA2165_RS04255Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 454 aa (52.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-302 aa · 67 aa · 14.8% of protein
Raw token
HisKA:236:0.00000000000212:302:67:643 HATPase_c#3
351-454 aa · 104 aa · 22.9% of protein
Raw token
HATPase_c:351:1.22e-18:454:110:109- Raw architecture: HAMP:159:0.0000477:225:69:69#HisKA:236:0.00000000000212:302:67:64#HATPase_c:351:1.22e-18:454:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000162015::NZ_GG697150.2::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span285283-287363Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_01029RefSeq proteinWP_005931240.1
Context group ID
GCF_000162015::NZ_GG697150.2::G00026Context members
FAEPRAA2165_RS04255FAEPRAA2165_RS04260
Partner locus tags
FAEPRAA2165_RS04255FAEPRAA2165_RS04260
Partner old locus tags
FAEPRAA2165_01029FAEPRAA2165_01030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005931240.1Primary protein accession used for annex mappings.
UniProt accessionC7H416Primary UniProt accession resolved in the annex database.
UniProt IDC7H416_FAED2Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS04255Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_01029Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697150.2Sequence record reported by the local genomic context database.
Genomic interval285 283-286 647 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span285 283-287 363 ntGCF_000162015::NZ_GG697150.2::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697150.2::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697150.2All displayed genes belong to this local TCS context.
Neighborhood span285 283-287 363 nt2 081 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
285 283 nt287 363 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAA2165_RS04255GCF_000162015#FAEPRAA2165_RS04255
HKClassicCurrent focus
285 283-286 647 nt · Reverse (-)
FAEPRAA2165_RS04260GCF_000162015#FAEPRAA2165_RS04260
RROmpR
286 644-287 363 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS04255The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1912097
Simplified PFAM architecture for HKOC_1912097
PFAM domain coverage: 170 / 454 aa (37.4%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-302] | HATPase_c[351-453]
- Domain count: 2
- Matched identifier: HKOC_1912097
- Positioned domains: HisKA 236-302 ; HATPase_c 351-453
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS04255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key