1 Response_reg#1
8-117 aa · 110 aa · 45.6% of protein
Raw token
Response_reg:8:1.98e-31:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS02510
Response regulator OmpR family
Faecalibacterium duncaniae · GCF_000162015
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000162015#FAEPRAA2165_RS02510Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 32.0% of protein
Raw token
Trans_reg_C:154:4.74e-21:230:77:77- Raw architecture: Response_reg:8:1.98e-31:117:111:111#Trans_reg_C:154:4.74e-21:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000162015::NZ_GG697149.2::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span533914-535705Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_00620RefSeq proteinWP_035393378.1
Context group ID
GCF_000162015::NZ_GG697149.2::G00037Context members
FAEPRAA2165_RS02505FAEPRAA2165_RS02510
Partner locus tags
FAEPRAA2165_RS02505FAEPRAA2165_RS02510
Partner old locus tags
FAEPRAA2165_00619FAEPRAA2165_00620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_035393378.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS02510Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_00620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697149.2Sequence record reported by the local genomic context database.
Genomic interval534 980-535 705 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span533 914-535 705 ntGCF_000162015::NZ_GG697149.2::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697149.2::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697149.2All displayed genes belong to this local TCS context.
Neighborhood span533 914-535 705 nt1 792 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
533 914 nt535 705 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAA2165_RS02505GCF_000162015#FAEPRAA2165_RS02505
HKClassic
533 914-534 990 nt · Forward (+)
FAEPRAA2165_RS02510GCF_000162015#FAEPRAA2165_RS02510
RROmpRCurrent focus
534 980-535 705 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS02510The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862813
Simplified PFAM architecture for RROC_0862813
PFAM domain coverage: 187 / 241 aa (77.6%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-117] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_0862813
- Positioned domains: Response_reg 8-117 ; Response_reg 8-117 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS02510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key