1 sCache_like#1
62-131 aa · 70 aa · 15.2% of protein
Raw token
sCache_like:62:0.0000206:131:70:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS21350
Histidine kinase, Classic
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160095#CLOSTHATH_RS21350Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 462 aa (53.2%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA#2
242-307 aa · 66 aa · 14.3% of protein
Raw token
HisKA:242:9.24e-18:307:66:643 HATPase_c#3
352-461 aa · 110 aa · 23.8% of protein
Raw token
HATPase_c:352:8.1e-34:461:110:109- Raw architecture: sCache_like:62:0.0000206:131:70:114#HisKA:242:9.24e-18:307:66:64#HATPase_c:352:8.1e-34:461:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160095::NZ_GG667719.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_04817RefSeq proteinWP_006775247.1
Context group ID
GCF_000160095::NZ_GG667719.1::G00058Context members
CLOSTHATH_RS21345CLOSTHATH_RS21350
Partner locus tags
CLOSTHATH_RS21345CLOSTHATH_RS21350
Partner old locus tags
CLOSTHATH_04816CLOSTHATH_04817
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006775247.1Primary protein accession used for annex mappings.
UniProt accessionD3AMG7Primary UniProt accession resolved in the annex database.
UniProt IDD3AMG7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS21350Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_04817Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667719.1Sequence record reported by the local genomic context database.
Genomic interval628-2 016 nt1 389 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 016 ntGCF_000160095::NZ_GG667719.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667719.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667719.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 016 nt2 016 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 016 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLOSTHATH_RS21345GCF_000160095#CLOSTHATH_RS21345
RROmpR
1-626 nt · Forward (+)
CLOSTHATH_RS21350GCF_000160095#CLOSTHATH_RS21350
HKClassicCurrent focus
628-2 016 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS21350The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1807491
Simplified PFAM architecture for HKOC_1807491
PFAM domain coverage: 174 / 462 aa (37.7%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[242-307] | HATPase_c[354-461]
- Domain count: 2
- Matched identifier: HKOC_1807491
- Positioned domains: HisKA 242-307 ; HATPase_c 354-461
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS21350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key