1 PAS_3#1
49-123 aa · 75 aa · 8.1% of protein
Raw token
PAS_3:49:0.00000336:123:75:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS01250
Histidine kinase, Hybrid
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassHKTypeHybridLength926 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000160095#CLOSTHATH_RS01250Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length926 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage581 / 926 aa (62.7%)Merged over positioned domains only.
Domain description2 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa926 aa
Domain-by-domain annotation6 items
2 PAS_3#2
300-385 aa · 86 aa · 9.3% of protein
Raw token
PAS_3:300:0.00000000439:385:86:893 HisKA#3
414-480 aa · 67 aa · 7.2% of protein
Raw token
HisKA:414:2.9e-17:480:67:644 HATPase_c#4
527-644 aa · 118 aa · 12.7% of protein
Raw token
HATPase_c:527:4.52e-32:644:118:1095 Response_reg#5
661-777 aa · 117 aa · 12.6% of protein
Raw token
Response_reg:661:2.43e-23:777:117:1116 Response_reg#6
804-921 aa · 118 aa · 12.7% of protein
Raw token
Response_reg:804:8.14e-29:921:118:111- Raw architecture: PAS_3:49:0.00000336:123:75:89#PAS_3:300:0.00000000439:385:86:89#HisKA:414:2.9e-17:480:67:64#HATPase_c:527:4.52e-32:644:118:109#Response_reg:661:2.43e-23:777:117:111#Response_reg:804:8.14e-29:921:118:111
- Domain description: 2 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000160095::NZ_GG667608.1::G00136
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span117226-120078Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_00295RefSeq proteinWP_006770852.1
Context group ID
GCF_000160095::NZ_GG667608.1::G00136Context members
CLOSTHATH_RS01250
Partner locus tags
CLOSTHATH_RS01250
Partner old locus tags
CLOSTHATH_00295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006770852.1Primary protein accession used for annex mappings.
UniProt accessionD3A9M4Primary UniProt accession resolved in the annex database.
UniProt IDD3A9M4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS01250Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_00295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667608.1Sequence record reported by the local genomic context database.
Genomic interval117 226-120 078 nt2 853 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 226-120 078 ntGCF_000160095::NZ_GG667608.1::G00136
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667608.1::G00136Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667608.1All displayed genes belong to this local TCS context.
Neighborhood span117 226-120 078 nt2 853 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 226 nt120 078 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLOSTHATH_RS01250GCF_000160095#CLOSTHATH_RS01250
HKHybridCurrent focus
117 226-120 078 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS01250The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0358386
Simplified PFAM architecture for HKOC_0358386
PFAM domain coverage: 481 / 926 aa (51.9%)
1 aa926 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[299-362] | HisKA[414-480] | HATPase_c[528-644] | Response_reg[661-776] | Response_reg[804-920]
- Domain count: 5
- Matched identifier: HKOC_0358386
- Positioned domains: PAS_3 299-362 ; HisKA 414-480 ; HATPase_c 528-644 ; Response_reg 661-776 ; Response_reg 804-920
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS01250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key