1 HisKA#1
359-424 aa · 66 aa · 7.5% of protein
Raw token
HisKA:359:0.00000000000000692:424:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS01225
Histidine kinase, Hybrid
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassHKTypeHybridLength875 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000160095#CLOSTHATH_RS01225Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length875 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage414 / 875 aa (47.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa875 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
473-588 aa · 116 aa · 13.3% of protein
Raw token
HATPase_c:473:1.99e-29:588:116:1093 Response_reg#3
609-724 aa · 116 aa · 13.3% of protein
Raw token
Response_reg:609:4.64e-25:724:116:1114 Response_reg#4
752-867 aa · 116 aa · 13.3% of protein
Raw token
Response_reg:752:1.75e-23:867:116:111- Raw architecture: HisKA:359:0.00000000000000692:424:66:64#HATPase_c:473:1.99e-29:588:116:109#Response_reg:609:4.64e-25:724:116:111#Response_reg:752:1.75e-23:867:116:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000160095::NZ_GG667608.1::G00135
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span110797-115732Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_00290RefSeq proteinWP_006770847.1
Context group ID
GCF_000160095::NZ_GG667608.1::G00135Context members
CLOSTHATH_RS01225CLOSTHATH_RS01235CLOSTHATH_RS01240
Partner locus tags
CLOSTHATH_RS01225CLOSTHATH_RS01235CLOSTHATH_RS01240
Partner old locus tags
CLOSTHATH_00290CLOSTHATH_00292CLOSTHATH_00293
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006770847.1Primary protein accession used for annex mappings.
UniProt accessionD3A9L9Primary UniProt accession resolved in the annex database.
UniProt IDD3A9L9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS01225Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_00290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667608.1Sequence record reported by the local genomic context database.
Genomic interval110 797-113 424 nt2 628 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span110 797-115 732 ntGCF_000160095::NZ_GG667608.1::G00135
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667608.1::G00135Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667608.1All displayed genes belong to this local TCS context.
Neighborhood span110 797-115 732 nt4 936 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 797 nt115 732 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
CLOSTHATH_RS01225GCF_000160095#CLOSTHATH_RS01225
HKHybridCurrent focus
110 797-113 424 nt · Forward (+)
CLOSTHATH_RS01235GCF_000160095#CLOSTHATH_RS01235
RROmpR
113 898-114 581 nt · Forward (+)
CLOSTHATH_RS01240GCF_000160095#CLOSTHATH_RS01240
HKClassic
114 575-115 732 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS01225The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0453054
Simplified PFAM architecture for HKOC_0453054
PFAM domain coverage: 413 / 875 aa (47.2%)
1 aa875 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[359-424] | HATPase_c[473-588] | Response_reg[609-723] | Response_reg[752-867]
- Domain count: 4
- Matched identifier: HKOC_0453054
- Positioned domains: HisKA 359-424 ; HATPase_c 473-588 ; Response_reg 609-723 ; Response_reg 752-867
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS01225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key