1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:1.36e-37:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS01235
Response regulator OmpR family
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000160095#CLOSTHATH_RS01235Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:145:2.64e-24:220:77:77- Raw architecture: Response_reg:4:1.36e-37:113:110:111#Trans_reg_C:145:2.64e-24:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000160095::NZ_GG667608.1::G00135
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span110797-115732Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_00292RefSeq proteinWP_006770849.1
Context group ID
GCF_000160095::NZ_GG667608.1::G00135Context members
CLOSTHATH_RS01225CLOSTHATH_RS01235CLOSTHATH_RS01240
Partner locus tags
CLOSTHATH_RS01225CLOSTHATH_RS01235CLOSTHATH_RS01240
Partner old locus tags
CLOSTHATH_00290CLOSTHATH_00292CLOSTHATH_00293
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006770849.1Primary protein accession used for annex mappings.
UniProt accessionD3A9M1Primary UniProt accession resolved in the annex database.
UniProt IDD3A9M1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS01235Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_00292Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667608.1Sequence record reported by the local genomic context database.
Genomic interval113 898-114 581 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span110 797-115 732 ntGCF_000160095::NZ_GG667608.1::G00135
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667608.1::G00135Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667608.1All displayed genes belong to this local TCS context.
Neighborhood span110 797-115 732 nt4 936 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 797 nt115 732 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
CLOSTHATH_RS01225GCF_000160095#CLOSTHATH_RS01225
HKHybrid
110 797-113 424 nt · Forward (+)
CLOSTHATH_RS01235GCF_000160095#CLOSTHATH_RS01235
RROmpRCurrent focus
113 898-114 581 nt · Forward (+)
CLOSTHATH_RS01240GCF_000160095#CLOSTHATH_RS01240
HKClassic
114 575-115 732 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS01235The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354595
Simplified PFAM architecture for RROC_1354595
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1354595
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS01235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key