1 Response_reg#1
5-117 aa · 113 aa · 50.0% of protein
Raw token
Response_reg:5:1.93e-28:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ANASTE_RS09165
Response regulator OmpR family
Anaerofustis stercorihominis DSM 17244 · GCF_000154825
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154825#ANASTE_RS09165Stable P2CS identifier used across views.
GenomeGCF_000154825Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 226 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 34.1% of protein
Raw token
Trans_reg_C:149:1.62e-36:225:77:77- Raw architecture: Response_reg:5:1.93e-28:117:113:111#Trans_reg_C:149:1.62e-36:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154825::NZ_DS560019.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span923185-925117Genomic interval covered by the local TCS group.
Identifiers
Old locus tagANASTE_01979RefSeq proteinWP_007050738.1
Context group ID
GCF_000154825::NZ_DS560019.1::G00011Context members
ANASTE_RS09165ANASTE_RS11515
Partner locus tags
ANASTE_RS09165ANASTE_RS11515
Partner old locus tags
ANASTE_01979ANASTE_01980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007050738.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DVC5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DVC5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagANASTE_RS09165Primary locus identifier stored in the genes table.
Old locus tagANASTE_01979Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS560019.1Sequence record reported by the local genomic context database.
Genomic interval923 185-923 865 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span923 185-925 117 ntGCF_000154825::NZ_DS560019.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154825::NZ_DS560019.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS560019.1All displayed genes belong to this local TCS context.
Neighborhood span923 185-925 117 nt1 933 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
923 185 nt925 117 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ANASTE_RS09165GCF_000154825#ANASTE_RS09165
RROmpRCurrent focus
923 185-923 865 nt · Forward (+)
ANASTE_RS11515GCF_000154825#ANASTE_RS11515
HKClassic
923 870-925 117 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS09165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408481
Simplified PFAM architecture for RROC_1408481
PFAM domain coverage: 189 / 226 aa (83.6%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-116] | Trans_reg_C[149-225]
- Domain count: 2
- Matched identifier: RROC_1408481
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; Trans_reg_C 149-225 ; Trans_reg_C 149-225
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS09165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 971 · GCF_000154825
AssemblyASM15482v1 · Scaffoldreference genome · haploid
Genome composition2 284 703 bp · 33,5% GCAnaerofustis stercorihominis DSM 17244
Signal transduction countsGenes 38 · HK 22 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
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