1 Response_reg#1
188-305 aa · 118 aa · 26.1% of protein
Raw token
Response_reg:188:3.62e-27:305:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ANASTE_RS02750
Response regulator, FrzZ family
Anaerofustis stercorihominis DSM 17244 · GCF_000154825
ClassRRTypeFrzZLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154825#ANASTE_RS02750Stable P2CS identifier used across views.
GenomeGCF_000154825Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage235 / 452 aa (52.0%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation2 items
2 Response_reg#2
331-447 aa · 117 aa · 25.9% of protein
Raw token
Response_reg:331:1.16e-26:447:117:111- Raw architecture: Response_reg:188:3.62e-27:305:118:111#Response_reg:331:1.16e-26:447:117:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154825::NZ_DS560015.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span562833-566983Genomic interval covered by the local TCS group.
Identifiers
Old locus tagANASTE_00939RefSeq proteinWP_007049383.1
Context group ID
GCF_000154825::NZ_DS560015.1::G00020Context members
ANASTE_RS11225ANASTE_RS02750
Partner locus tags
ANASTE_RS11225ANASTE_RS02750
Partner old locus tags
ANASTE_00938ANASTE_00939
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007049383.1Primary protein accession used for annex mappings.
UniProt accessionB1C882Primary UniProt accession resolved in the annex database.
UniProt IDB1C882_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagANASTE_RS02750Primary locus identifier stored in the genes table.
Old locus tagANASTE_00939Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS560015.1Sequence record reported by the local genomic context database.
Genomic interval565 625-566 983 nt1 359 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span562 833-566 983 ntGCF_000154825::NZ_DS560015.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154825::NZ_DS560015.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS560015.1All displayed genes belong to this local TCS context.
Neighborhood span562 833-566 983 nt4 151 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
562 833 nt566 983 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ANASTE_RS11225GCF_000154825#ANASTE_RS11225
HKHybrid
562 833-565 451 nt · Reverse (-)
ANASTE_RS02750GCF_000154825#ANASTE_RS02750
RRFrzZCurrent focus
565 625-566 983 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS02750The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0278073
Simplified PFAM architecture for RROC_0278073
PFAM domain coverage: 351 / 452 aa (77.7%)
1 aa452 aa
HATPase_cResponse_regResponse_reg
- Simplified architecture: HATPase_c + Response_reg + Response_reg
- Raw architecture: HATPase_c[54-170] | Response_reg[188-305] | Response_reg[331-446]
- Domain count: 3
- Matched identifier: RROC_0278073
- Positioned domains: HATPase_c 54-170 ; HATPase_c 54-170 ; Response_reg 188-305 ; Response_reg 188-305 ; Response_reg 331-446 ; Response_reg 331-446
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS02750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 971 · GCF_000154825
AssemblyASM15482v1 · Scaffoldreference genome · haploid
Genome composition2 284 703 bp · 33,5% GCAnaerofustis stercorihominis DSM 17244
Signal transduction countsGenes 38 · HK 22 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key