1 KdpD#1
23-232 aa · 210 aa · 23.4% of protein
Raw token
KdpD:23:2.49e-135:232:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9319_RS03390
Histidine kinase, Classic
Streptococcus equinus ATCC 700338 · GCF_000146405
ClassHKTypeClassicLength899 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000146405#HMPREF9319_RS03390Stable P2CS identifier used across views.
GenomeGCF_000146405Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length899 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage388 / 899 aa (43.2%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa899 aa
Domain-by-domain annotation3 items
2 HisKA#2
672-739 aa · 68 aa · 7.6% of protein
Raw token
HisKA:672:0.00000000000438:739:68:643 HATPase_c#3
783-892 aa · 110 aa · 12.2% of protein
Raw token
HATPase_c:783:6.66e-29:892:110:109- Raw architecture: KdpD:23:2.49e-135:232:210:210#HisKA:672:0.00000000000438:739:68:64#HATPase_c:783:6.66e-29:892:110:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000146405::NZ_GL397128.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span703259-706652Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9319_0699RefSeq proteinWP_003064240.1
Context group ID
GCF_000146405::NZ_GL397128.1::G00006Context members
HMPREF9319_RS03390HMPREF9319_RS03395
Partner locus tags
HMPREF9319_RS03390HMPREF9319_RS03395
Partner old locus tags
HMPREF9319_0699HMPREF9319_0700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003064240.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YIY8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YIY8_STRMCDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9319_RS03390Primary locus identifier stored in the genes table.
Old locus tagHMPREF9319_0699Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL397128.1Sequence record reported by the local genomic context database.
Genomic interval703 259-705 958 nt2 700 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span703 259-706 652 ntGCF_000146405::NZ_GL397128.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146405::NZ_GL397128.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL397128.1All displayed genes belong to this local TCS context.
Neighborhood span703 259-706 652 nt3 394 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
703 259 nt706 652 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9319_RS03390GCF_000146405#HMPREF9319_RS03390
HKClassicCurrent focus
703 259-705 958 nt · Forward (+)
HMPREF9319_RS03395GCF_000146405#HMPREF9319_RS03395
RROmpR
705 951-706 652 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS03390The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0407356
Simplified PFAM architecture for HKOC_0407356
PFAM domain coverage: 494 / 899 aa (54.9%)
1 aa899 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[23-232] | DUF4118[403-509] | HisKA[672-738] | HATPase_c[784-893]
- Domain count: 4
- Matched identifier: HKOC_0407356
- Positioned domains: KdpD 23-232 ; DUF4118 403-509 ; HisKA 672-738 ; HATPase_c 784-893
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS03390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 864 569 · GCF_000146405
AssemblyASM14640v1 · Scaffoldhaploid
Genome composition2 083 084 bp · 37,0% GCStreptococcus equinus ATCC 700338
Signal transduction countsGenes 30 · HK 14 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key