1 HisKA_3#1
132-200 aa · 69 aa · 20.2% of protein
Raw token
HisKA_3:132:2.32e-18:200:69:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9319_RS01850
Histidine kinase, Classic
Streptococcus equinus ATCC 700338 · GCF_000146405
ClassHKTypeClassicLength341 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000146405#HMPREF9319_RS01850Stable P2CS identifier used across views.
GenomeGCF_000146405Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length341 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 341 aa (46.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa341 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
238-327 aa · 90 aa · 26.4% of protein
Raw token
HATPase_c:238:0.00000000000151:327:105:109- Raw architecture: HisKA_3:132:2.32e-18:200:69:68#HATPase_c:238:0.00000000000151:327:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000146405::NZ_GL397128.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span374899-376552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9319_0369RefSeq proteinWP_003063533.1
Context group ID
GCF_000146405::NZ_GL397128.1::G00002Context members
HMPREF9319_RS01850HMPREF9319_RS01855
Partner locus tags
HMPREF9319_RS01850HMPREF9319_RS01855
Partner old locus tags
HMPREF9319_0369HMPREF9319_0370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003063533.1Primary protein accession used for annex mappings.
UniProt accessionE0PBZ6Primary UniProt accession resolved in the annex database.
UniProt IDE0PBZ6_STREIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9319_RS01850Primary locus identifier stored in the genes table.
Old locus tagHMPREF9319_0369Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL397128.1Sequence record reported by the local genomic context database.
Genomic interval374 899-375 924 nt1 026 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span374 899-376 552 ntGCF_000146405::NZ_GL397128.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146405::NZ_GL397128.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL397128.1All displayed genes belong to this local TCS context.
Neighborhood span374 899-376 552 nt1 654 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
374 899 nt376 552 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9319_RS01850GCF_000146405#HMPREF9319_RS01850
HKClassicCurrent focus
374 899-375 924 nt · Forward (+)
HMPREF9319_RS01855GCF_000146405#HMPREF9319_RS01855
RRNarL
375 908-376 552 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS01850The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2833926
Simplified PFAM architecture for HKOC_2833926
PFAM domain coverage: 159 / 341 aa (46.6%)
1 aa341 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[132-200] | HATPase_c[238-327]
- Domain count: 2
- Matched identifier: HKOC_2833926
- Positioned domains: HisKA_3 132-200 ; HATPase_c 238-327
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS01850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 864 569 · GCF_000146405
AssemblyASM14640v1 · Scaffoldhaploid
Genome composition2 083 084 bp · 37,0% GCStreptococcus equinus ATCC 700338
Signal transduction countsGenes 30 · HK 14 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key