1 HisKA#1
87-150 aa · 64 aa · 21.0% of protein
Raw token
HisKA:87:0.0000000557:150:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9319_RS02160
Histidine kinase, Classic
Streptococcus equinus ATCC 700338 · GCF_000146405
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000146405#HMPREF9319_RS02160Stable P2CS identifier used across views.
GenomeGCF_000146405Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 305 aa (56.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-304 aa · 108 aa · 35.4% of protein
Raw token
HATPase_c:197:7.19e-26:304:108:109- Raw architecture: HisKA:87:0.0000000557:150:64:64#HATPase_c:197:7.19e-26:304:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000146405::NZ_GL397128.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span435699-437317Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9319_0438RefSeq proteinWP_003063660.1
Context group ID
GCF_000146405::NZ_GL397128.1::G00004Context members
HMPREF9319_RS02160HMPREF9319_RS02165
Partner locus tags
HMPREF9319_RS02160HMPREF9319_RS02165
Partner old locus tags
HMPREF9319_0438HMPREF9319_0439
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003063660.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YEK2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YEK2_STRMCDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9319_RS02160Primary locus identifier stored in the genes table.
Old locus tagHMPREF9319_0438Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL397128.1Sequence record reported by the local genomic context database.
Genomic interval435 699-436 616 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span435 699-437 317 ntGCF_000146405::NZ_GL397128.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146405::NZ_GL397128.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL397128.1All displayed genes belong to this local TCS context.
Neighborhood span435 699-437 317 nt1 619 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
435 699 nt437 317 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9319_RS02160GCF_000146405#HMPREF9319_RS02160
HKClassicCurrent focus
435 699-436 616 nt · Reverse (-)
HMPREF9319_RS02165GCF_000146405#HMPREF9319_RS02165
RROmpR
436 619-437 317 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS02160The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2881996
Simplified PFAM architecture for HKOC_2881996
PFAM domain coverage: 171 / 305 aa (56.1%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-150] | HATPase_c[197-303]
- Domain count: 2
- Matched identifier: HKOC_2881996
- Positioned domains: HisKA 87-150 ; HATPase_c 197-303
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS02160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 864 569 · GCF_000146405
AssemblyASM14640v1 · Scaffoldhaploid
Genome composition2 083 084 bp · 37,0% GCStreptococcus equinus ATCC 700338
Signal transduction countsGenes 30 · HK 14 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key