1 HisKA_3#1
242-309 aa · 68 aa · 15.5% of protein
Raw token
HisKA_3:242:5.24e-22:309:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9319_RS00495
Histidine kinase, Classic
Streptococcus equinus ATCC 700338 · GCF_000146405
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000146405#HMPREF9319_RS00495Stable P2CS identifier used across views.
GenomeGCF_000146405Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 438 aa (34.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
347-430 aa · 84 aa · 19.2% of protein
Raw token
HATPase_c:347:0.000000000344:430:103:109- Raw architecture: HisKA_3:242:5.24e-22:309:68:68#HATPase_c:347:0.000000000344:430:103:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000146405::NZ_GL397128.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83395-85400Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9319_0092RefSeq proteinWP_370695861.1
Context group ID
GCF_000146405::NZ_GL397128.1::G00001Context members
HMPREF9319_RS00495HMPREF9319_RS00500
Partner locus tags
HMPREF9319_RS00495HMPREF9319_RS00500
Partner old locus tags
HMPREF9319_0092HMPREF9319_0093
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_370695861.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9319_RS00495Primary locus identifier stored in the genes table.
Old locus tagHMPREF9319_0092Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL397128.1Sequence record reported by the local genomic context database.
Genomic interval83 395-84 720 nt1 326 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 395-85 400 ntGCF_000146405::NZ_GL397128.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146405::NZ_GL397128.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL397128.1All displayed genes belong to this local TCS context.
Neighborhood span83 395-85 400 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 395 nt85 400 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9319_RS00495GCF_000146405#HMPREF9319_RS00495
HKClassicCurrent focus
83 395-84 720 nt · Forward (+)
HMPREF9319_RS00500GCF_000146405#HMPREF9319_RS00500
RRNarL
84 717-85 400 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000826225#TY73_RS08915Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2062176
Simplified PFAM architecture for HKOC_2062176
PFAM domain coverage: 152 / 441 aa (34.5%)
1 aa441 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[245-312] | HATPase_c[351-434]
- Domain count: 2
- Matched identifier: HKOC_2062176
- Positioned domains: HisKA_3 245-312 ; HATPase_c 351-434
Cluster members and taxonomy
Representative gene: GCF_000826225#TY73_RS08915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 864 569 · GCF_000146405
AssemblyASM14640v1 · Scaffoldhaploid
Genome composition2 083 084 bp · 37,0% GCStreptococcus equinus ATCC 700338
Signal transduction countsGenes 30 · HK 14 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key