1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.00000000000651:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9319_RS02890
Histidine kinase, Classic
Streptococcus equinus ATCC 700338 · GCF_000146405
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000146405#HMPREF9319_RS02890Stable P2CS identifier used across views.
GenomeGCF_000146405Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 440 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-296 aa · 66 aa · 15.0% of protein
Raw token
HisKA:231:0.000000186:296:66:643 HATPase_c#3
344-437 aa · 94 aa · 21.4% of protein
Raw token
HATPase_c:344:0.0000000000028:437:101:109- Raw architecture: HAMP:144:0.00000000000651:211:68:69#HisKA:231:0.000000186:296:66:64#HATPase_c:344:0.0000000000028:437:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000146405::NZ_GL397128.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span589908-591883Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9319_0590RefSeq proteinWP_003063986.1
Context group ID
GCF_000146405::NZ_GL397128.1::G00005Context members
HMPREF9319_RS02885HMPREF9319_RS02890
Partner locus tags
HMPREF9319_RS02885HMPREF9319_RS02890
Partner old locus tags
HMPREF9319_0589HMPREF9319_0590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003063986.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YIH1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YIH1_STRMCDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9319_RS02890Primary locus identifier stored in the genes table.
Old locus tagHMPREF9319_0590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL397128.1Sequence record reported by the local genomic context database.
Genomic interval590 561-591 883 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span589 908-591 883 ntGCF_000146405::NZ_GL397128.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146405::NZ_GL397128.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL397128.1All displayed genes belong to this local TCS context.
Neighborhood span589 908-591 883 nt1 976 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
589 908 nt591 883 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9319_RS02885GCF_000146405#HMPREF9319_RS02885
RROmpR
589 908-590 564 nt · Forward (+)
HMPREF9319_RS02890GCF_000146405#HMPREF9319_RS02890
HKClassicCurrent focus
590 561-591 883 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS02890The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2071611
Simplified PFAM architecture for HKOC_2071611
PFAM domain coverage: 199 / 440 aa (45.2%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[162-212] | HisKA[232-295] | HATPase_c[343-426]
- Domain count: 3
- Matched identifier: HKOC_2071611
- Positioned domains: HAMP 162-212 ; HisKA 232-295 ; HATPase_c 343-426
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS02890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 864 569 · GCF_000146405
AssemblyASM14640v1 · Scaffoldhaploid
Genome composition2 083 084 bp · 37,0% GCStreptococcus equinus ATCC 700338
Signal transduction countsGenes 30 · HK 14 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key