1 Response_reg#1
4-113 aa · 110 aa · 55.6% of protein
Raw token
Response_reg:4:1.85e-22:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9319_RS02090
Response regulator NarL family
Streptococcus equinus ATCC 700338 · GCF_000146405
ClassRRTypeNarLLength198 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000146405#HMPREF9319_RS02090Stable P2CS identifier used across views.
GenomeGCF_000146405Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length198 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 198 aa (84.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa198 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
135-192 aa · 58 aa · 29.3% of protein
Raw token
HTH_LUXR:135:3.94e-20:192:58:58- Raw architecture: Response_reg:4:1.85e-22:113:111:111#HTH_LUXR:135:3.94e-20:192:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000146405::NZ_GL397128.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span424784-425380Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9319_0422RefSeq proteinWP_003063639.1
Context group ID
GCF_000146405::NZ_GL397128.1::G00003Context members
HMPREF9319_RS02090
Partner locus tags
HMPREF9319_RS02090
Partner old locus tags
HMPREF9319_0422
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003063639.1Primary protein accession used for annex mappings.
UniProt accessionE0PC49Primary UniProt accession resolved in the annex database.
UniProt IDE0PC49_STREIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9319_RS02090Primary locus identifier stored in the genes table.
Old locus tagHMPREF9319_0422Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL397128.1Sequence record reported by the local genomic context database.
Genomic interval424 784-425 380 nt597 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span424 784-425 380 ntGCF_000146405::NZ_GL397128.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146405::NZ_GL397128.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL397128.1All displayed genes belong to this local TCS context.
Neighborhood span424 784-425 380 nt597 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
424 784 nt425 380 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9319_RS02090GCF_000146405#HMPREF9319_RS02090
RRNarLCurrent focus
424 784-425 380 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS02090The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2148828
Simplified PFAM architecture for RROC_2148828
PFAM domain coverage: 166 / 198 aa (83.8%)
1 aa198 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-113] | GerE[137-192]
- Domain count: 2
- Matched identifier: RROC_2148828
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; GerE 137-192 ; GerE 137-192
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS02090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 864 569 · GCF_000146405
AssemblyASM14640v1 · Scaffoldhaploid
Genome composition2 083 084 bp · 37,0% GCStreptococcus equinus ATCC 700338
Signal transduction countsGenes 30 · HK 14 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key