1 HisKA#1
10-74 aa · 65 aa · 28.4% of protein
Raw token
HisKA:10:0.0000000000421:74:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFY52_RS07580
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_964272155
ClassHKTypeClassicLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_964272155#ACFY52_RS07580Stable P2CS identifier used across views.
GenomeGCF_964272155Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 229 aa (73.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
120-223 aa · 104 aa · 45.4% of protein
Raw token
HATPase_c:120:2.87e-18:223:109:109- Raw architecture: HisKA:10:0.0000000000421:74:65:64#HATPase_c:120:2.87e-18:223:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_964272155::NZ_OZ186737.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1502188-1502877Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964272155::NZ_OZ186737.1::G00023Context members
ACFY52_RS07580
Partner locus tags
ACFY52_RS07580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022037812.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q4F6A4Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q4F6A4_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFY52_RS07580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OZ186737.1Sequence record reported by the local genomic context database.
Genomic interval1 502 188-1 502 877 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 502 188-1 502 877 ntGCF_964272155::NZ_OZ186737.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964272155::NZ_OZ186737.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OZ186737.1All displayed genes belong to this local TCS context.
Neighborhood span1 502 188-1 502 877 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 502 188 nt1 502 877 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACFY52_RS07580GCF_964272155#ACFY52_RS07580
HKClassicCurrent focus
1 502 188-1 502 877 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS09415Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2926314
Simplified PFAM architecture for HKOC_2926314
PFAM domain coverage: 168 / 229 aa (73.4%)
1 aa229 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[10-74] | HATPase_c[121-223]
- Domain count: 2
- Matched identifier: HKOC_2926314
- Positioned domains: HisKA 10-74 ; HATPase_c 121-223
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS09415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_964272155
AssemblyLUMC_Rgna_QRD044 · Complete Genomehaploid
Genome composition3 128 629 bp · 43,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key