1 dCache_1#1
42-221 aa · 180 aa · 31.5% of protein
Raw token
dCache_1:42:0.00000792:221:181:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFY52_RS01000
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_964272155
ClassHKTypeClassicLength571 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964272155#ACFY52_RS01000Stable P2CS identifier used across views.
GenomeGCF_964272155Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length571 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage430 / 571 aa (75.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa571 aa
Domain-by-domain annotation4 items
2 HAMP#2
281-347 aa · 67 aa · 11.7% of protein
Raw token
HAMP:281:0.0000000000112:347:67:693 His_kinase#3
362-441 aa · 80 aa · 14.0% of protein
Raw token
His_kinase:362:2.29e-28:441:80:804 HATPase_c#4
458-560 aa · 103 aa · 18.0% of protein
Raw token
HATPase_c:458:0.000000000000168:560:112:109- Raw architecture: dCache_1:42:0.00000792:221:181:195#HAMP:281:0.0000000000112:347:67:69#His_kinase:362:2.29e-28:441:80:80#HATPase_c:458:0.000000000000168:560:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964272155::NZ_OZ186737.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span213521-216746Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964272155::NZ_OZ186737.1::G00004Context members
ACFY52_RS00995ACFY52_RS01000
Partner locus tags
ACFY52_RS00995ACFY52_RS01000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101875127.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFY52_RS01000Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OZ186737.1Sequence record reported by the local genomic context database.
Genomic interval215 031-216 746 nt1 716 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span213 521-216 746 ntGCF_964272155::NZ_OZ186737.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964272155::NZ_OZ186737.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OZ186737.1All displayed genes belong to this local TCS context.
Neighborhood span213 521-216 746 nt3 226 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
213 521 nt216 746 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFY52_RS00995GCF_964272155#ACFY52_RS00995
RRunclassified
213 521-215 059 nt · Forward (+)
ACFY52_RS01000GCF_964272155#ACFY52_RS01000
HKClassicCurrent focus
215 031-216 746 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS12425Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1208207
Simplified PFAM architecture for HKOC_1208207
PFAM domain coverage: 230 / 571 aa (40.3%)
1 aa571 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[295-346] | His_kinase[363-439] | HATPase_c[459-559]
- Domain count: 3
- Matched identifier: HKOC_1208207
- Positioned domains: HAMP 295-346 ; His_kinase 363-439 ; HATPase_c 459-559
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS12425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_964272155
AssemblyLUMC_Rgna_QRD044 · Complete Genomehaploid
Genome composition3 128 629 bp · 43,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key