1 Response_reg#1
2-83 aa · 82 aa · 48.8% of protein
Raw token
Response_reg:2:7.76e-24:83:82:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWC59_RS01740
Response regulator NarL family
uncultured Anaerostipes sp. · GCF_938039965
ClassRRTypeNarLLength168 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_938039965#QWC59_RS01740Stable P2CS identifier used across views.
GenomeGCF_938039965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length168 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 168 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa168 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
108-161 aa · 54 aa · 32.1% of protein
Raw token
HTH_LUXR:108:0.00000000000309:161:54:58- Raw architecture: Response_reg:2:7.76e-24:83:82:111#HTH_LUXR:108:0.00000000000309:161:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_938039965::NZ_CALHTU010000035.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span233-3254Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_938039965::NZ_CALHTU010000035.1::G00004Context members
QWC59_RS01740QWC59_RS01745
Partner locus tags
QWC59_RS01740QWC59_RS01745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330680516.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWC59_RS01740Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALHTU010000035.1Sequence record reported by the local genomic context database.
Genomic interval233-739 nt507 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span233-3 254 ntGCF_938039965::NZ_CALHTU010000035.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_938039965::NZ_CALHTU010000035.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALHTU010000035.1All displayed genes belong to this local TCS context.
Neighborhood span233-3 254 nt3 022 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
233 nt3 254 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QWC59_RS01740GCF_938039965#QWC59_RS01740
RRNarLCurrent focus
233-739 nt · Reverse (-)
QWC59_RS01745GCF_938039965#QWC59_RS01745
HKUnorthodox
840-3 254 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_938039965#QWC59_RS01740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2200330
Simplified PFAM architecture for RROC_2200330
PFAM domain coverage: 133 / 168 aa (79.2%)
1 aa168 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-82] | GerE[110-161]
- Domain count: 2
- Matched identifier: RROC_2200330
- Positioned domains: Response_reg 2-82 ; GerE 110-161
Cluster members and taxonomy
Representative gene: GCF_938039965#QWC59_RS01740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 512 318 · GCF_938039965
AssemblyERR1430537_bin.69_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 605 936 bp · 37,0% GCuncultured Anaerostipes sp.
Signal transduction countsGenes 46 · HK 23 · RR 22CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key