1 Response_reg#1
3-109 aa · 107 aa · 69.0% of protein
Raw token
Response_reg:3:0.000000000000107:109:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWC59_RS03390
Response regulator, CheY family
uncultured Anaerostipes sp. · GCF_938039965
ClassRRTypeCheYLength155 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_938039965#QWC59_RS03390Stable P2CS identifier used across views.
GenomeGCF_938039965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length155 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage107 / 155 aa (69.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa155 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:0.000000000000107:109:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_938039965::NZ_CALHTU010000066.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-465Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_938039965::NZ_CALHTU010000066.1::G00006Context members
QWC59_RS03390
Partner locus tags
QWC59_RS03390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_289002598.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWC59_RS03390Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALHTU010000066.1Sequence record reported by the local genomic context database.
Genomic interval1-465 nt465 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-465 ntGCF_938039965::NZ_CALHTU010000066.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_938039965::NZ_CALHTU010000066.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALHTU010000066.1All displayed genes belong to this local TCS context.
Neighborhood span1-465 nt465 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt465 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QWC59_RS03390GCF_938039965#QWC59_RS03390
RRCheYCurrent focus
1-465 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS04890Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932873
Simplified PFAM architecture for RROC_0932873
PFAM domain coverage: 203 / 238 aa (85.3%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0932873
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS04890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 512 318 · GCF_938039965
AssemblyERR1430537_bin.69_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 605 936 bp · 37,0% GCuncultured Anaerostipes sp.
Signal transduction countsGenes 46 · HK 23 · RR 22CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key