1 HisKA#1
345-410 aa · 66 aa · 9.1% of protein
Raw token
HisKA:345:0.0000000000000254:410:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWC59_RS01135
Histidine kinase, Hybrid
uncultured Anaerostipes sp. · GCF_938039965
ClassHKTypeHybridLength726 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_938039965#QWC59_RS01135Stable P2CS identifier used across views.
GenomeGCF_938039965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length726 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage297 / 726 aa (40.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa726 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
463-576 aa · 114 aa · 15.7% of protein
Raw token
HATPase_c:463:1.34e-27:576:114:1093 Response_reg#3
599-715 aa · 117 aa · 16.1% of protein
Raw token
Response_reg:599:3.45e-27:715:117:111- Raw architecture: HisKA:345:0.0000000000000254:410:66:64#HATPase_c:463:1.34e-27:576:114:109#Response_reg:599:3.45e-27:715:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_938039965::NZ_CALHTU010000020.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4873-7053Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_938039965::NZ_CALHTU010000020.1::G00002Context members
QWC59_RS01135
Partner locus tags
QWC59_RS01135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118627761.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWC59_RS01135Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALHTU010000020.1Sequence record reported by the local genomic context database.
Genomic interval4 873-7 053 nt2 181 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 873-7 053 ntGCF_938039965::NZ_CALHTU010000020.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_938039965::NZ_CALHTU010000020.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALHTU010000020.1All displayed genes belong to this local TCS context.
Neighborhood span4 873-7 053 nt2 181 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 873 nt7 053 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QWC59_RS01135GCF_938039965#QWC59_RS01135
HKHybridCurrent focus
4 873-7 053 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022719335#QVD24_RS02040Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0721994
Simplified PFAM architecture for HKOC_0721994
PFAM domain coverage: 296 / 726 aa (40.8%)
1 aa726 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-410] | HATPase_c[463-575] | Response_reg[599-715]
- Domain count: 3
- Matched identifier: HKOC_0721994
- Positioned domains: HisKA 345-410 ; HATPase_c 463-575 ; Response_reg 599-715
Cluster members and taxonomy
Representative gene: GCF_022719335#QVD24_RS02040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 512 318 · GCF_938039965
AssemblyERR1430537_bin.69_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 605 936 bp · 37,0% GCuncultured Anaerostipes sp.
Signal transduction countsGenes 46 · HK 23 · RR 22CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key