1 Response_reg#1
6-73 aa · 68 aa · 93.2% of protein
Raw token
Response_reg:6:9.47e-16:73:68:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWB75_RS08230
Response regulator, CheY family
uncultured Catenibacterium sp. · GCF_937997555
ClassRRTypeCheYLength73 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_937997555#QWB75_RS08230Stable P2CS identifier used across views.
GenomeGCF_937997555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length73 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage68 / 73 aa (93.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa73 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:9.47e-16:73:68:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_937997555::NZ_CALLFE010000027.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span10122-10343Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937997555::NZ_CALLFE010000027.1::G00013Context members
QWB75_RS08230
Partner locus tags
QWB75_RS08230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288951425.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWB75_RS08230Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALLFE010000027.1Sequence record reported by the local genomic context database.
Genomic interval10 122-10 343 nt222 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 122-10 343 ntGCF_937997555::NZ_CALLFE010000027.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937997555::NZ_CALLFE010000027.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALLFE010000027.1All displayed genes belong to this local TCS context.
Neighborhood span10 122-10 343 nt222 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 122 nt10 343 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QWB75_RS08230GCF_937997555#QWB75_RS08230
RRCheYCurrent focus
10 122-10 343 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029225825#PUE92_RS04615Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0101963
Simplified PFAM architecture for RROC_0101963
PFAM domain coverage: 314 / 535 aa (58.7%)
1 aa535 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[165-287] | HTH_18[447-524]
- Domain count: 3
- Matched identifier: RROC_0101963
- Positioned domains: Response_reg 6-118 ; GGDEF_2 165-287 ; HTH_18 447-524
Cluster members and taxonomy
Representative gene: GCF_029225825#PUE92_RS04615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 286 142 · GCF_937997555
AssemblySRR11615778_bin.76_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 418 648 bp · 34,0% GCuncultured Catenibacterium sp.
Signal transduction countsGenes 34 · HK 15 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key