1 dCache_1#1
157-262 aa · 106 aa · 18.5% of protein
Raw token
dCache_1:157:0.000032:262:114:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWB75_RS08220
Histidine kinase, Classic
uncultured Catenibacterium sp. · GCF_937997555
ClassHKTypeClassicLength572 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_937997555#QWB75_RS08220Stable P2CS identifier used across views.
GenomeGCF_937997555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length572 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage359 / 572 aa (62.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa572 aa
Domain-by-domain annotation4 items
2 HAMP#2
278-348 aa · 71 aa · 12.4% of protein
Raw token
HAMP:278:0.00000000203:348:71:693 His_kinase#3
363-442 aa · 80 aa · 14.0% of protein
Raw token
His_kinase:363:2.12e-34:442:80:804 HATPase_c#4
462-563 aa · 102 aa · 17.8% of protein
Raw token
HATPase_c:462:0.00000000000000131:563:105:109- Raw architecture: dCache_1:157:0.000032:262:114:195#HAMP:278:0.00000000203:348:71:69#His_kinase:363:2.12e-34:442:80:80#HATPase_c:462:0.00000000000000131:563:105:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_937997555::NZ_CALLFE010000027.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span7046-8764Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937997555::NZ_CALLFE010000027.1::G00012Context members
QWB75_RS08220
Partner locus tags
QWB75_RS08220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288951422.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWB75_RS08220Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALLFE010000027.1Sequence record reported by the local genomic context database.
Genomic interval7 046-8 764 nt1 719 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 046-8 764 ntGCF_937997555::NZ_CALLFE010000027.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937997555::NZ_CALLFE010000027.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALLFE010000027.1All displayed genes belong to this local TCS context.
Neighborhood span7 046-8 764 nt1 719 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 046 nt8 764 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QWB75_RS08220GCF_937997555#QWB75_RS08220
HKClassicCurrent focus
7 046-8 764 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_937997555#QWB75_RS08220The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1207192
Simplified PFAM architecture for HKOC_1207192
PFAM domain coverage: 231 / 572 aa (40.4%)
1 aa572 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[299-347] | His_kinase[364-442] | HATPase_c[462-564]
- Domain count: 3
- Matched identifier: HKOC_1207192
- Positioned domains: HAMP 299-347 ; His_kinase 364-442 ; HATPase_c 462-564
Cluster members and taxonomy
Representative gene: GCF_937997555#QWB75_RS08220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 286 142 · GCF_937997555
AssemblySRR11615778_bin.76_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 418 648 bp · 34,0% GCuncultured Catenibacterium sp.
Signal transduction countsGenes 34 · HK 15 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key